File R-expertsurv.spec of Package R-expertsurv

# Automatically generated by CRAN2OBS
# 
# Spec file for package expertsurv 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  expertsurv 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.4.0 
Release:        0 
Summary:        Incorporate Expert Opinion with Parametric Survival Models 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         expertsurv_1.4.0.tar.gz 
Requires:       R-base 
Requires:	R-abind
Requires:	R-assertthat
Requires:	R-dplyr
Requires:	R-generics
Requires:	R-ggplot2
Requires:	R-magrittr
Requires:	R-numDeriv
Requires:	R-purrr
Requires:	R-Rcpp
Requires:	R-Rdpack
Requires:	R-rlang
Requires:	R-rms
Requires:	R-rstan
Requires:	R-rstantools
Requires:	R-rstpm2
Requires:	R-scales
Requires:	R-SHELF
Requires:	R-statmod
Requires:	R-stringr
Requires:	R-tibble
Requires:	R-tidyr
Requires:	R-tidyselect
Requires:	R-broom
Requires:	R-sn
Requires:	R-muhaz
Requires:	R-mvtnorm
Requires:	R-quadprog
Requires:	R-BH
Requires:	R-RcppArmadillo
Requires:	R-RcppEigen
Requires:	R-RcppParallel
Requires:	R-splines2
Requires:	R-StanHeaders
Requires:	R-backports
Requires:	R-cli
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-pillar
Requires:	R-R6
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-withr
Requires:	R-rbibutils
Requires:	R-Hmisc
Requires:	R-quantreg
Requires:	R-SparseM
Requires:	R-polspline
Requires:	R-multcomp
Requires:	R-htmlTable
Requires:	R-htmltools
Requires:	R-digest
Requires:	R-colorspace
Requires:	R-knitr
Requires:	R-inline
Requires:	R-gridExtra
Requires:	R-loo
Requires:	R-pkgbuild
Requires:	R-QuickJSR
Requires:	R-desc
Requires:	R-bbmle
Requires:	R-fastGHQuad
Requires:	R-lsoda
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-flexsurv
Requires:	R-ggExtra
Requires:	R-ggridges
Requires:	R-rmarkdown
Requires:	R-shiny
Requires:	R-shinyMatrix
Requires:	R-survminer
Requires:	R-mnormt
Requires:	R-stringi
Requires:	R-pkgconfig
Requires:	R-cpp11
Requires:	R-bdsmatrix
Requires:	R-deSolve
Requires:	R-mstate
Requires:	R-colourpicker
Requires:	R-miniUI
Requires:	R-shinyjs
Requires:	R-data.table
Requires:	R-base64enc
Requires:	R-Formula
Requires:	R-checkmate
Requires:	R-htmlwidgets
Requires:	R-rstudioapi
Requires:	R-fastmap
Requires:	R-evaluate
Requires:	R-highr
Requires:	R-xfun
Requires:	R-yaml
Requires:	R-matrixStats
Requires:	R-posterior
Requires:	R-TH.data
Requires:	R-sandwich
Requires:	R-utf8
Requires:	R-callr
Requires:	R-processx
Requires:	R-MatrixModels
Requires:	R-bslib
Requires:	R-fontawesome
Requires:	R-jquerylib
Requires:	R-jsonlite
Requires:	R-tinytex
Requires:	R-httpuv
Requires:	R-mime
Requires:	R-xtable
Requires:	R-sourcetools
Requires:	R-later
Requires:	R-promises
Requires:	R-commonmark
Requires:	R-cachem
Requires:	R-ggpubr
Requires:	R-maxstat
Requires:	R-survMisc
Requires:	R-ggtext
Requires:	R-memoise
Requires:	R-sass
Requires:	R-ggrepel
Requires:	R-ggsci
Requires:	R-cowplot
Requires:	R-ggsignif
Requires:	R-polynom
Requires:	R-rstatix
Requires:	R-gridtext
Requires:	R-exactRankTests
Requires:	R-tensorA
Requires:	R-distributional
Requires:	R-ps
Requires:	R-otel
Requires:	R-zoo
Requires:	R-KMsurv
Requires:	R-km.ci
Requires:	R-curl
Requires:	R-markdown
Requires:	R-png
Requires:	R-jpeg
Requires:	R-xml2
Requires:	R-corrplot
Requires:	R-car
Requires:	R-fs
Requires:	R-rappdirs
Requires:	R-carData
Requires:	R-pbkrtest
Requires:	R-lme4
Requires:	R-litedown
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-reformulas
Requires:	R-doBy
Requires:	R-Deriv
Requires:	R-modelr
Requires:	R-microbenchmark
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-abind
BuildRequires: 	R-assertthat
BuildRequires: 	R-dplyr
BuildRequires: 	R-generics
BuildRequires: 	R-ggplot2
BuildRequires: 	R-magrittr
BuildRequires: 	R-numDeriv
BuildRequires: 	R-purrr
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-Rdpack
BuildRequires: 	R-rlang
BuildRequires: 	R-rms
BuildRequires: 	R-rstan-devel
BuildRequires: 	R-rstantools
BuildRequires: 	R-rstpm2
BuildRequires: 	R-scales
BuildRequires: 	R-SHELF
BuildRequires: 	R-statmod
BuildRequires: 	R-stringr
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyr
BuildRequires: 	R-tidyselect
BuildRequires: 	R-broom
BuildRequires: 	R-sn
BuildRequires: 	R-muhaz
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-quadprog
BuildRequires: 	R-BH-devel
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-RcppParallel-devel
BuildRequires: 	R-splines2
BuildRequires: 	R-StanHeaders-devel
BuildRequires: 	R-backports
BuildRequires: 	R-cli
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-withr
BuildRequires: 	R-rbibutils
BuildRequires: 	R-Hmisc
BuildRequires: 	R-quantreg
BuildRequires: 	R-SparseM
BuildRequires: 	R-polspline
BuildRequires: 	R-multcomp
BuildRequires: 	R-htmlTable
BuildRequires: 	R-htmltools
BuildRequires: 	R-digest
BuildRequires: 	R-colorspace
BuildRequires: 	R-knitr
BuildRequires: 	R-inline
BuildRequires: 	R-gridExtra
BuildRequires: 	R-loo
BuildRequires: 	R-pkgbuild
BuildRequires: 	R-QuickJSR-devel
BuildRequires: 	R-desc
BuildRequires: 	R-bbmle
BuildRequires: 	R-fastGHQuad
BuildRequires: 	R-lsoda
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-flexsurv
BuildRequires: 	R-ggExtra
BuildRequires: 	R-ggridges
BuildRequires: 	R-rmarkdown
BuildRequires: 	R-shiny
BuildRequires: 	R-shinyMatrix
BuildRequires: 	R-survminer
BuildRequires: 	R-mnormt
BuildRequires: 	R-stringi
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-bdsmatrix
BuildRequires: 	R-deSolve-devel
BuildRequires: 	R-mstate
BuildRequires: 	R-colourpicker
BuildRequires: 	R-miniUI
BuildRequires: 	R-shinyjs
BuildRequires: 	R-data.table
BuildRequires: 	R-base64enc
BuildRequires: 	R-Formula
BuildRequires: 	R-checkmate
BuildRequires: 	R-htmlwidgets
BuildRequires: 	R-rstudioapi
BuildRequires: 	R-fastmap
BuildRequires: 	R-evaluate
BuildRequires: 	R-highr
BuildRequires: 	R-xfun
BuildRequires: 	R-yaml
BuildRequires: 	R-matrixStats
BuildRequires: 	R-posterior
BuildRequires: 	R-TH.data
BuildRequires: 	R-sandwich
BuildRequires: 	R-utf8
BuildRequires: 	R-callr
BuildRequires: 	R-processx
BuildRequires: 	R-MatrixModels
BuildRequires: 	R-bslib
BuildRequires: 	R-fontawesome
BuildRequires: 	R-jquerylib
BuildRequires: 	R-jsonlite
BuildRequires: 	R-tinytex
BuildRequires: 	R-httpuv
BuildRequires: 	R-mime
BuildRequires: 	R-xtable
BuildRequires: 	R-sourcetools-devel
BuildRequires: 	R-later
BuildRequires: 	R-promises
BuildRequires: 	R-commonmark
BuildRequires: 	R-cachem
BuildRequires: 	R-ggpubr
BuildRequires: 	R-maxstat
BuildRequires: 	R-survMisc
BuildRequires: 	R-ggtext
BuildRequires: 	R-memoise
BuildRequires: 	R-sass
BuildRequires: 	R-ggrepel
BuildRequires: 	R-ggsci
BuildRequires: 	R-cowplot
BuildRequires: 	R-ggsignif
BuildRequires: 	R-polynom
BuildRequires: 	R-rstatix
BuildRequires: 	R-gridtext
BuildRequires: 	R-exactRankTests
BuildRequires: 	R-tensorA
BuildRequires: 	R-distributional
BuildRequires: 	R-ps
BuildRequires: 	R-otel
BuildRequires: 	R-zoo
BuildRequires: 	R-KMsurv
BuildRequires: 	R-km.ci
BuildRequires: 	R-curl
BuildRequires: 	R-markdown
BuildRequires: 	R-png
BuildRequires: 	R-jpeg
BuildRequires: 	R-xml2
BuildRequires: 	R-corrplot
BuildRequires: 	R-car
BuildRequires: 	R-fs
BuildRequires: 	R-rappdirs
BuildRequires: 	R-carData
BuildRequires: 	R-pbkrtest
BuildRequires: 	R-lme4
BuildRequires: 	R-litedown
BuildRequires: 	R-minqa
BuildRequires: 	R-nloptr
BuildRequires: 	R-reformulas
BuildRequires: 	R-doBy
BuildRequires: 	R-Deriv
BuildRequires: 	R-modelr
BuildRequires: 	R-microbenchmark
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-rmarkdown
Suggests:	R-bookdown
Suggests:	R-knitr
Suggests:	R-rjags
Suggests:	R-R2jags
Suggests:	R-loo
Suggests:	R-xlsx
Suggests:	R-shiny
Suggests:	R-shinyWidgets
Suggests:	R-shinycssloaders
Suggests:	R-shinyjs
Suggests:	R-shinyMatrix
Suggests:	R-shinybusy
Suggests:	R-ggpubr
Suggests:	R-splines2
Suggests:	R-survminer
Suggests:	R-colorspace
Suggests:	R-testthat
Suggests:	R-covr
Suggests:	R-eha
%description 
Enables users to incorporate expert opinion with parametric survival 
analysis using a Bayesian or frequentist approach. Expert Opinion can 
be provided on the survival probabilities at certain time-point(s) or 
for the difference in mean survival between two treatment arms. Please 
reference it's use as Cooney, P., White, A. (2023) 
<doi:10.1177/0272989X221150212>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.txt
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/REFERENCES.bib
%{rlibdir}/%{packname}/REFERENCES.bib.sav.tmp
%{rlibdir}/%{packname}/Report
%{rlibdir}/%{packname}/app
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/figures
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/image
%{rlibdir}/%{packname}/include
%{rlibdir}/%{packname}/libs
%{rlibdir}/%{packname}/stan
 
%changelog 
openSUSE Build Service is sponsored by