File R-fdapace.spec of Package R-fdapace

# Automatically generated by CRAN2OBS
# 
# Spec file for package fdapace 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
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# published by the Open Source Initiative. 
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# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
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%global packname  fdapace 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.6.0 
Release:        0 
Summary:        Functional Data Analysis and Empirical Dynamics 
Group:          Development/Libraries/Other 
License:        BSD_3_clause + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         fdapace_0.6.0.tar.gz 
Requires:       R-base 
Requires:	R-Rcpp
Requires:	R-Hmisc
Requires:	R-pracma
Requires:	R-numDeriv
Requires:	R-RcppEigen
Requires:	R-ggplot2
Requires:	R-gtable
Requires:	R-gridExtra
Requires:	R-data.table
Requires:	R-htmlTable
Requires:	R-viridis
Requires:	R-htmltools
Requires:	R-base64enc
Requires:	R-colorspace
Requires:	R-rmarkdown
Requires:	R-knitr
Requires:	R-Formula
Requires:	R-cli
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-rlang
Requires:	R-S7
Requires:	R-scales
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-glue
Requires:	R-stringr
Requires:	R-magrittr
Requires:	R-checkmate
Requires:	R-htmlwidgets
Requires:	R-rstudioapi
Requires:	R-digest
Requires:	R-fastmap
Requires:	R-evaluate
Requires:	R-highr
Requires:	R-xfun
Requires:	R-yaml
Requires:	R-bslib
Requires:	R-fontawesome
Requires:	R-jquerylib
Requires:	R-jsonlite
Requires:	R-tinytex
Requires:	R-viridisLite
Requires:	R-cachem
Requires:	R-memoise
Requires:	R-mime
Requires:	R-sass
Requires:	R-backports
Requires:	R-farver
Requires:	R-labeling
Requires:	R-R6
Requires:	R-RColorBrewer
Requires:	R-stringi
Requires:	R-fs
Requires:	R-rappdirs
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-Hmisc
BuildRequires: 	R-pracma
BuildRequires: 	R-numDeriv
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-ggplot2
BuildRequires: 	R-gtable
BuildRequires: 	R-gridExtra
BuildRequires: 	R-data.table
BuildRequires: 	R-htmlTable
BuildRequires: 	R-viridis
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BuildRequires: 	R-Formula
BuildRequires: 	R-cli
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-rlang
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-glue
BuildRequires: 	R-stringr
BuildRequires: 	R-magrittr
BuildRequires: 	R-checkmate
BuildRequires: 	R-htmlwidgets
BuildRequires: 	R-rstudioapi
BuildRequires: 	R-digest
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BuildRequires: 	R-stringi
BuildRequires: 	R-fs
BuildRequires: 	R-rappdirs
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-plot3D
Suggests:	R-rgl
Suggests:	R-aplpack
Suggests:	R-ks
Suggests:	R-gtools
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-EMCluster
Suggests:	R-minqa
Suggests:	R-testthat
%description 
A versatile package that provides implementation of various methods of 
Functional Data Analysis (FDA) and Empirical Dynamics. The core of this 
package is Functional Principal Component Analysis (FPCA), a key 
technique for functional data analysis, for sparsely or densely sampled 
random trajectories and time courses, via the Principal Analysis by 
Conditional Estimation (PACE) algorithm. This core algorithm yields 
covariance and mean functions, eigenfunctions and principal component 
(scores), for both functional data and derivatives, for both dense 
(functional) and sparse (longitudinal) sampling designs. For sparse 
designs, it provides fitted continuous trajectories with confidence 
bands, even for subjects with very few longitudinal observations. PACE 
is a viable and flexible alternative to random effects modeling of 
longitudinal data. There is also a Matlab version (PACE) that contains 
some methods not available on fdapace and vice versa. Updates to 
fdapace were supported by grants from NIH Echo and NSF DMS-1712864 and 
DMS-2014626. Please cite our package if you use it (You may run the 
command citation("fdapace") to get the citation format and bibtex 
entry). References: Wang, J.L., Chiou, J., Müller, H.G. (2016) 
<doi:10.1146/annurev-statistics-041715-033624>; Chen, K., Zhang, X., 
Petersen, A., Müller, H.G. (2017) <doi:10.1007/s12561-015-9137-5>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
 
%changelog