File R-hesim.spec of Package R-hesim
# Automatically generated by CRAN2OBS
#
# Spec file for package hesim
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
#
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
#
# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
%global packname hesim
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 0.5.7
Release: 0
Summary: Health Economic Simulation Modeling and Decision Analysis
Group: Development/Libraries/Other
License: GPL-3
URL: http://cran.r-project.org/web/packages/%{packname}
Source: hesim_0.5.7.tar.gz
Requires: R-%{packname}-devel
Requires: R-base
Requires: R-data.table
Requires: R-flexsurv
Requires: R-ggplot2
Requires: R-msm
Requires: R-Rcpp
Requires: R-R6
Requires: R-RcppArmadillo
Requires: R-assertthat
Requires: R-deSolve
Requires: R-generics
Requires: R-magrittr
Requires: R-mstate
Requires: R-muhaz
Requires: R-mvtnorm
Requires: R-numDeriv
Requires: R-quadprog
Requires: R-rlang
Requires: R-rstpm2
Requires: R-purrr
Requires: R-statmod
Requires: R-tibble
Requires: R-tidyr
Requires: R-dplyr
Requires: R-tidyselect
Requires: R-cli
Requires: R-gtable
Requires: R-isoband
Requires: R-lifecycle
Requires: R-S7
Requires: R-scales
Requires: R-vctrs
Requires: R-withr
Requires: R-expm
Requires: R-glue
Requires: R-pillar
Requires: R-RColorBrewer
Requires: R-viridisLite
Requires: R-bbmle
Requires: R-fastGHQuad
Requires: R-farver
Requires: R-labeling
Requires: R-pkgconfig
Requires: R-stringr
Requires: R-cpp11
Requires: R-bdsmatrix
Requires: R-utf8
Requires: R-stringi
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-data.table
BuildRequires: R-flexsurv
BuildRequires: R-ggplot2
BuildRequires: R-msm
BuildRequires: R-Rcpp-devel
BuildRequires: R-R6
BuildRequires: R-RcppArmadillo-devel
BuildRequires: R-assertthat
BuildRequires: R-deSolve-devel
BuildRequires: R-generics
BuildRequires: R-magrittr
BuildRequires: R-mstate
BuildRequires: R-muhaz
BuildRequires: R-mvtnorm
BuildRequires: R-numDeriv
BuildRequires: R-quadprog
BuildRequires: R-rlang
BuildRequires: R-rstpm2
BuildRequires: R-purrr
BuildRequires: R-statmod
BuildRequires: R-tibble
BuildRequires: R-tidyr
BuildRequires: R-dplyr
BuildRequires: R-tidyselect
BuildRequires: R-cli
BuildRequires: R-gtable
BuildRequires: R-isoband
BuildRequires: R-lifecycle
BuildRequires: R-S7
BuildRequires: R-scales
BuildRequires: R-vctrs
BuildRequires: R-withr
BuildRequires: R-expm
BuildRequires: R-glue
BuildRequires: R-pillar
BuildRequires: R-RColorBrewer
BuildRequires: R-viridisLite
BuildRequires: R-bbmle
BuildRequires: R-fastGHQuad
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-pkgconfig
BuildRequires: R-stringr
BuildRequires: R-cpp11-devel
BuildRequires: R-bdsmatrix
BuildRequires: R-utf8
BuildRequires: R-stringi
BuildRequires: gcc gcc-c++ gcc-fortran
Suggests: R-covr
Suggests: R-kableExtra
Suggests: R-knitr
Suggests: R-magrittr
Suggests: R-mstate
Suggests: R-numDeriv
Suggests: R-pracma
Suggests: R-rmarkdown
Suggests: R-scales
Suggests: R-testthat
Suggests: R-truncnorm
%package devel
Summary: Development files for %{packname}
Requires: %{name} = %{version}
Requires: R-base-devel
%description
A modular and computationally efficient R package for parameterizing,
simulating, and analyzing health economic simulation models. The
package supports cohort discrete time state transition models (Briggs
et al. 1998) <doi:10.2165/00019053-199813040-00003>, N-state
partitioned survival models (Glasziou et al. 1990)
<doi:10.1002/sim.4780091106>, and individual-level continuous time
state transition models (Siebert et al. 2012)
<doi:10.1016/j.jval.2012.06.014>, encompassing both Markov
(time-homogeneous and time-inhomogeneous) and semi-Markov processes.
Decision uncertainty from a cost-effectiveness analysis is quantified
with standard graphical and tabular summaries of a probabilistic
sensitivity analysis (Claxton et al. 2005, Barton et al. 2008)
<doi:10.1002/hec.985>, <doi:10.1111/j.1524-4733.2008.00358.x>. Use of
C++ and data.table make individual-patient simulation, probabilistic
sensitivity analysis, and incorporation of patient heterogeneity fast.
%description devel
Development files and header needed to build packages using %{packname}
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
%files devel
%{rlibdir}/%{packname}/include
%changelog
