File R-hmmTMB.spec of Package R-hmmTMB

# Automatically generated by CRAN2OBS
# 
# Spec file for package hmmTMB 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  hmmTMB 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.1.2 
Release:        0 
Summary:        Fit Hidden Markov Models using Template Model Builder 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         hmmTMB_1.1.2.tar.gz 
Requires:       R-base 
Requires:	R-R6
Requires:	R-TMB
Requires:	R-ggplot2
Requires:	R-stringr
Requires:	R-tmbstan
Requires:	R-RcppEigen
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-rlang
Requires:	R-S7
Requires:	R-scales
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-Rcpp
Requires:	R-glue
Requires:	R-magrittr
Requires:	R-stringi
Requires:	R-rstan
Requires:	R-StanHeaders
Requires:	R-BH
Requires:	R-RcppParallel
Requires:	R-cpp11
Requires:	R-inline
Requires:	R-gridExtra
Requires:	R-loo
Requires:	R-pkgbuild
Requires:	R-QuickJSR
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-checkmate
Requires:	R-matrixStats
Requires:	R-posterior
Requires:	R-callr
Requires:	R-desc
Requires:	R-processx
Requires:	R-backports
Requires:	R-abind
Requires:	R-tibble
Requires:	R-tensorA
Requires:	R-pillar
Requires:	R-distributional
Requires:	R-ps
Requires:	R-generics
Requires:	R-numDeriv
Requires:	R-utf8
Requires:	R-pkgconfig
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-R6
BuildRequires: 	R-TMB-devel
BuildRequires: 	R-ggplot2
BuildRequires: 	R-stringr
BuildRequires: 	R-tmbstan
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-rlang
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-glue
BuildRequires: 	R-magrittr
BuildRequires: 	R-stringi
BuildRequires: 	R-rstan-devel
BuildRequires: 	R-StanHeaders-devel
BuildRequires: 	R-BH-devel
BuildRequires: 	R-RcppParallel-devel
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-inline
BuildRequires: 	R-gridExtra
BuildRequires: 	R-loo
BuildRequires: 	R-pkgbuild
BuildRequires: 	R-QuickJSR
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-checkmate
BuildRequires: 	R-matrixStats
BuildRequires: 	R-posterior
BuildRequires: 	R-callr
BuildRequires: 	R-desc
BuildRequires: 	R-processx
BuildRequires: 	R-backports
BuildRequires: 	R-abind
BuildRequires: 	R-tibble
BuildRequires: 	R-tensorA
BuildRequires: 	R-pillar
BuildRequires: 	R-distributional
BuildRequires: 	R-ps
BuildRequires: 	R-generics
BuildRequires: 	R-numDeriv
BuildRequires: 	R-utf8
BuildRequires: 	R-pkgconfig
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-rstan
Suggests:	R-testthat
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-moveHMM
Suggests:	R-scico
Suggests:	R-MSwM
Suggests:	R-unmarked
%description 
Fitting hidden Markov models using automatic differentiation and 
Laplace approximation, allowing for fast inference and flexible 
covariate effects (including random effects and smoothing splines) on 
model parameters. The package is described by Michelot (2025) 
<doi:10.18637/jss.v114.i05>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/case_studies
%{rlibdir}/%{packname}/devel
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/examples
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
%{rlibdir}/%{packname}/simulations
 
%changelog