File R-htrSPRanalysis.spec of Package R-htrSPRanalysis

# Automatically generated by CRAN2OBS
# 
# Spec file for package htrSPRanalysis 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  htrSPRanalysis 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.0 
Release:        0 
Summary:        Analysis of Surface Plasmon Resonance Data 
Group:          Development/Libraries/Other 
License:        GPL (>= 3) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         htrSPRanalysis_0.1.0.tar.gz 
Requires:       R-base 
Requires:	R-magrittr
Requires:	R-readxl
Requires:	R-openxlsx
Requires:	R-minpack.lm
Requires:	R-zoo
Requires:	R-gridExtra
Requires:	R-readr
Requires:	R-rlang
Requires:	R-dplyr
Requires:	R-stringr
Requires:	R-tidyselect
Requires:	R-ggplot2
Requires:	R-purrr
Requires:	R-forcats
Requires:	R-tibble
Requires:	R-tidyr
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-pillar
Requires:	R-R6
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-scales
Requires:	R-withr
Requires:	R-Rcpp
Requires:	R-stringi
Requires:	R-zip
Requires:	R-clipr
Requires:	R-crayon
Requires:	R-hms
Requires:	R-vroom
Requires:	R-cpp11
Requires:	R-tzdb
Requires:	R-cellranger
Requires:	R-progress
Requires:	R-pkgconfig
Requires:	R-rematch
Requires:	R-utf8
Requires:	R-prettyunits
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-bit64
Requires:	R-bit
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-magrittr
BuildRequires: 	R-readxl
BuildRequires: 	R-openxlsx
BuildRequires: 	R-minpack.lm
BuildRequires: 	R-zoo
BuildRequires: 	R-gridExtra
BuildRequires: 	R-readr
BuildRequires: 	R-rlang
BuildRequires: 	R-dplyr
BuildRequires: 	R-stringr
BuildRequires: 	R-tidyselect
BuildRequires: 	R-ggplot2
BuildRequires: 	R-purrr
BuildRequires: 	R-forcats
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyr
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-withr
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-stringi
BuildRequires: 	R-zip
BuildRequires: 	R-clipr
BuildRequires: 	R-crayon
BuildRequires: 	R-hms
BuildRequires: 	R-vroom
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-tzdb
BuildRequires: 	R-cellranger
BuildRequires: 	R-progress
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-rematch
BuildRequires: 	R-utf8
BuildRequires: 	R-prettyunits
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-bit64
BuildRequires: 	R-bit
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-markdown
Suggests:	R-qpdf
%description 
Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry 
data, with automations for high-throughput SPR. This version of the 
package fits the 1: 1 binding model, with and without bulkshift. It 
offers optional local or global Rmax fitting. The user must provide a 
sample sheet and a Carterra output file in Carterra's current format. 
There is a utility function to convert from Carterra's old output 
format. The user may run a custom pipeline or use the provided 
'Runscript', which will produce a pdf file containing fitted Rmax, ka, 
kd and standard errors, a plot of the sensorgram and fits, and a plot 
of residuals. The script will also produce a .csv file with all of the 
relevant parameters for each spot on the SPR chip. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/extdata
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog