File R-jtdm.spec of Package R-jtdm

# Automatically generated by CRAN2OBS
# 
# Spec file for package jtdm 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  jtdm 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.3 
Release:        0 
Summary:        Joint Modelling of Functional Traits 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         jtdm_0.1-3.tar.gz 
Requires:       R-base 
Requires:	R-ggforce
Requires:	R-mniw
Requires:	R-mvtnorm
Requires:	R-ggplot2
Requires:	R-gridExtra
Requires:	R-reshape2
Requires:	R-scales
Requires:	R-tweenr
Requires:	R-gtable
Requires:	R-rlang
Requires:	R-polyclip
Requires:	R-tidyselect
Requires:	R-withr
Requires:	R-lifecycle
Requires:	R-cli
Requires:	R-vctrs
Requires:	R-systemfonts
Requires:	R-cpp11
Requires:	R-isoband
Requires:	R-S7
Requires:	R-Rcpp
Requires:	R-RcppEigen
Requires:	R-plyr
Requires:	R-stringr
Requires:	R-glue
Requires:	R-farver
Requires:	R-labeling
Requires:	R-R6
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-magrittr
Requires:	R-stringi
Requires:	R-base64enc
Requires:	R-jsonlite
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-ggforce
BuildRequires: 	R-mniw
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-ggplot2
BuildRequires: 	R-gridExtra
BuildRequires: 	R-reshape2
BuildRequires: 	R-scales
BuildRequires: 	R-tweenr
BuildRequires: 	R-gtable
BuildRequires: 	R-rlang
BuildRequires: 	R-polyclip
BuildRequires: 	R-tidyselect
BuildRequires: 	R-withr
BuildRequires: 	R-lifecycle
BuildRequires: 	R-cli
BuildRequires: 	R-vctrs
BuildRequires: 	R-systemfonts
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-plyr
BuildRequires: 	R-stringr
BuildRequires: 	R-glue
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-R6
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-magrittr
BuildRequires: 	R-stringi
BuildRequires: 	R-base64enc
BuildRequires: 	R-jsonlite
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-devtools
%description 
Fitting and analyzing a Joint Trait Distribution Model. The Joint Trait 
Distribution Model is implemented in the Bayesian framework using 
conjugate priors and posteriors, thus guaranteeing fast inference. In 
particular the package computes joint probabilities and multivariate 
confidence intervals, and enables the investigation of how they depend 
on the environment through partial response curves. The method 
implemented by the package is described in Poggiato et al. (2023) 
<doi:10.1111/geb.13706>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog