File R-metadeconfoundR.spec of Package R-metadeconfoundR

# Automatically generated by CRAN2OBS
# 
# Spec file for package metadeconfoundR 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  metadeconfoundR 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0.2 
Release:        0 
Summary:        Covariate-Sensitive Analysis of Cross-Sectional High-Dimensional Data 
Group:          Development/Libraries/Other 
License:        GPL-2 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         metadeconfoundR_1.0.2.tar.gz 
Requires:       R-base 
Requires:	R-detectseparation
Requires:	R-lmtest
Requires:	R-foreach
Requires:	R-doParallel
Requires:	R-futile.logger
Requires:	R-lme4
Requires:	R-ggplot2
Requires:	R-reshape2
Requires:	R-rlang
Requires:	R-ROI
Requires:	R-ROI.plugin.lpsolve
Requires:	R-lpSolveAPI
Requires:	R-pkgload
Requires:	R-iterators
Requires:	R-lambda.r
Requires:	R-futile.options
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-S7
Requires:	R-scales
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-reformulas
Requires:	R-Rcpp
Requires:	R-RcppEigen
Requires:	R-zoo
Requires:	R-plyr
Requires:	R-stringr
Requires:	R-glue
Requires:	R-formatR
Requires:	R-desc
Requires:	R-fs
Requires:	R-pkgbuild
Requires:	R-processx
Requires:	R-rprojroot
Requires:	R-Rdpack
Requires:	R-registry
Requires:	R-slam
Requires:	R-checkmate
Requires:	R-farver
Requires:	R-labeling
Requires:	R-R6
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-magrittr
Requires:	R-stringi
Requires:	R-backports
Requires:	R-callr
Requires:	R-ps
Requires:	R-rbibutils
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-detectseparation
BuildRequires: 	R-lmtest
BuildRequires: 	R-foreach
BuildRequires: 	R-doParallel
BuildRequires: 	R-futile.logger
BuildRequires: 	R-lme4
BuildRequires: 	R-ggplot2
BuildRequires: 	R-reshape2
BuildRequires: 	R-rlang
BuildRequires: 	R-ROI
BuildRequires: 	R-ROI.plugin.lpsolve
BuildRequires: 	R-lpSolveAPI-devel
BuildRequires: 	R-pkgload
BuildRequires: 	R-iterators
BuildRequires: 	R-lambda.r
BuildRequires: 	R-futile.options
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-minqa
BuildRequires: 	R-nloptr
BuildRequires: 	R-reformulas
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-zoo
BuildRequires: 	R-plyr
BuildRequires: 	R-stringr
BuildRequires: 	R-glue
BuildRequires: 	R-formatR
BuildRequires: 	R-desc
BuildRequires: 	R-fs
BuildRequires: 	R-pkgbuild
BuildRequires: 	R-processx
BuildRequires: 	R-rprojroot
BuildRequires: 	R-Rdpack
BuildRequires: 	R-registry
BuildRequires: 	R-slam
BuildRequires: 	R-checkmate
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-R6
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-magrittr
BuildRequires: 	R-stringi
BuildRequires: 	R-backports
BuildRequires: 	R-callr
BuildRequires: 	R-ps
BuildRequires: 	R-rbibutils
 
Suggests:	R-pander
Suggests:	R-knitr
Suggests:	R-gridExtra
Suggests:	R-kableExtra
%description 
Using non-parametric tests, naive associations between omics features 
and metadata in cross-sectional data-sets are detected. In a second 
step, confounding effects between metadata associated to the same omics 
feature are detected and labeled using nested post-hoc model comparison 
tests, as first described in Forslund, Chakaroun, Zimmermann-Kogadeeva, 
et al. (2021) <doi:10.1038/s41586-021-04177-9>. The generated output 
can be graphically summarized using the built-in plotting function. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog