File R-mpwR.spec of Package R-mpwR

# Automatically generated by CRAN2OBS
# 
# Spec file for package mpwR 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  mpwR 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.5.1 
Release:        0 
Summary:        Standardized Comparison of Workflows in Mass Spectrometry-Based Bottom-Up Proteomics 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         mpwR_0.1.5.1.tar.gz 
Requires:       R-base 
Requires:	R-comprehenr
Requires:	R-data.table
Requires:	R-dplyr
Requires:	R-flowTraceR
Requires:	R-forcats
Requires:	R-ggplot2
Requires:	R-magrittr
Requires:	R-plotly
Requires:	R-purrr
Requires:	R-stringr
Requires:	R-tibble
Requires:	R-tidyr
Requires:	R-UpSetR
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-pillar
Requires:	R-R6
Requires:	R-rlang
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-scales
Requires:	R-withr
Requires:	R-httr
Requires:	R-jsonlite
Requires:	R-digest
Requires:	R-viridisLite
Requires:	R-base64enc
Requires:	R-htmltools
Requires:	R-htmlwidgets
Requires:	R-RColorBrewer
Requires:	R-lazyeval
Requires:	R-crosstalk
Requires:	R-promises
Requires:	R-stringi
Requires:	R-pkgconfig
Requires:	R-cpp11
Requires:	R-gridExtra
Requires:	R-plyr
Requires:	R-fastmap
Requires:	R-knitr
Requires:	R-rmarkdown
Requires:	R-yaml
Requires:	R-curl
Requires:	R-mime
Requires:	R-openssl
Requires:	R-utf8
Requires:	R-Rcpp
Requires:	R-later
Requires:	R-otel
Requires:	R-farver
Requires:	R-labeling
Requires:	R-evaluate
Requires:	R-highr
Requires:	R-xfun
Requires:	R-askpass
Requires:	R-bslib
Requires:	R-fontawesome
Requires:	R-jquerylib
Requires:	R-tinytex
Requires:	R-sys
Requires:	R-cachem
Requires:	R-memoise
Requires:	R-sass
Requires:	R-fs
Requires:	R-rappdirs
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-comprehenr
BuildRequires: 	R-data.table
BuildRequires: 	R-dplyr
BuildRequires: 	R-flowTraceR
BuildRequires: 	R-forcats
BuildRequires: 	R-ggplot2
BuildRequires: 	R-magrittr
BuildRequires: 	R-plotly
BuildRequires: 	R-purrr
BuildRequires: 	R-stringr
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyr
BuildRequires: 	R-UpSetR
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-rlang
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-withr
BuildRequires: 	R-httr
BuildRequires: 	R-jsonlite
BuildRequires: 	R-digest
BuildRequires: 	R-viridisLite
BuildRequires: 	R-base64enc
BuildRequires: 	R-htmltools
BuildRequires: 	R-htmlwidgets
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-lazyeval
BuildRequires: 	R-crosstalk
BuildRequires: 	R-promises
BuildRequires: 	R-stringi
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-gridExtra
BuildRequires: 	R-plyr
BuildRequires: 	R-fastmap
BuildRequires: 	R-knitr
BuildRequires: 	R-rmarkdown
BuildRequires: 	R-yaml
BuildRequires: 	R-curl
BuildRequires: 	R-mime
BuildRequires: 	R-openssl
BuildRequires: 	R-utf8
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-later
BuildRequires: 	R-otel
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-evaluate
BuildRequires: 	R-highr
BuildRequires: 	R-xfun
BuildRequires: 	R-askpass
BuildRequires: 	R-bslib
BuildRequires: 	R-fontawesome
BuildRequires: 	R-jquerylib
BuildRequires: 	R-tinytex
BuildRequires: 	R-sys
BuildRequires: 	R-cachem
BuildRequires: 	R-memoise
BuildRequires: 	R-sass
BuildRequires: 	R-fs
BuildRequires: 	R-rappdirs
 
Suggests:	R-flextable
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-testthat
%description 
Useful functions to analyze proteomic workflows including number of 
identifications, data completeness, missed cleavages, quantitative and 
retention time precision etc. Various software outputs are supported 
such as 'ProteomeDiscoverer', 'Spectronaut', 'DIA-NN' and 'MaxQuant'. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog