File R-nandb.spec of Package R-nandb
# Automatically generated by CRAN2OBS
#
# Spec file for package nandb
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
#
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
#
# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
%global packname nandb
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 2.1.1
Release: 0
Summary: Number and Brightness Image Analysis
Group: Development/Libraries/Other
License: BSD_3_clause + file LICENSE
URL: http://cran.r-project.org/web/packages/%{packname}
Source: nandb_2.1.1.tar.gz
Requires: R-base
Requires: R-assertthat
Requires: R-autothresholdr
Requires: R-BBmisc
Requires: R-checkmate
Requires: R-detrendr
Requires: R-dplyr
Requires: R-filesstrings
Requires: R-ggplot2
Requires: R-glue
Requires: R-ijtiff
Requires: R-magrittr
Requires: R-purrr
Requires: R-Rcpp
Requires: R-reshape2
Requires: R-rlang
Requires: R-stringr
Requires: R-viridis
Requires: R-withr
Requires: R-strex
Requires: R-data.table
Requires: R-backports
Requires: R-arrayhelpers
Requires: R-doParallel
Requires: R-foreach
Requires: R-iterators
Requires: R-plyr
Requires: R-RcppParallel
Requires: R-cli
Requires: R-generics
Requires: R-lifecycle
Requires: R-pillar
Requires: R-R6
Requires: R-tibble
Requires: R-tidyselect
Requires: R-vctrs
Requires: R-stringi
Requires: R-gtable
Requires: R-isoband
Requires: R-S7
Requires: R-scales
Requires: R-fs
Requires: R-jsonlite
Requires: R-lubridate
Requires: R-readr
Requires: R-viridisLite
Requires: R-gridExtra
Requires: R-svUnit
Requires: R-timechange
Requires: R-utf8
Requires: R-clipr
Requires: R-crayon
Requires: R-hms
Requires: R-vroom
Requires: R-cpp11
Requires: R-tzdb
Requires: R-farver
Requires: R-labeling
Requires: R-RColorBrewer
Requires: R-pkgconfig
Requires: R-bit64
Requires: R-progress
Requires: R-bit
Requires: R-prettyunits
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-assertthat
BuildRequires: R-autothresholdr
BuildRequires: R-BBmisc
BuildRequires: R-checkmate
BuildRequires: R-detrendr
BuildRequires: R-dplyr
BuildRequires: R-filesstrings
BuildRequires: R-ggplot2
BuildRequires: R-glue
BuildRequires: R-ijtiff
BuildRequires: R-magrittr
BuildRequires: R-purrr
BuildRequires: R-Rcpp-devel
BuildRequires: R-reshape2
BuildRequires: R-rlang
BuildRequires: R-stringr
BuildRequires: R-viridis
BuildRequires: R-withr
BuildRequires: R-strex
BuildRequires: R-data.table
BuildRequires: R-backports
BuildRequires: R-arrayhelpers
BuildRequires: R-doParallel
BuildRequires: R-foreach
BuildRequires: R-iterators
BuildRequires: R-plyr
BuildRequires: R-RcppParallel-devel
BuildRequires: R-cli
BuildRequires: R-generics
BuildRequires: R-lifecycle
BuildRequires: R-pillar
BuildRequires: R-R6
BuildRequires: R-tibble
BuildRequires: R-tidyselect
BuildRequires: R-vctrs
BuildRequires: R-stringi
BuildRequires: R-gtable
BuildRequires: R-isoband
BuildRequires: R-S7
BuildRequires: R-scales
BuildRequires: R-fs
BuildRequires: R-jsonlite
BuildRequires: R-lubridate
BuildRequires: R-readr
BuildRequires: R-viridisLite
BuildRequires: R-gridExtra
BuildRequires: R-svUnit
BuildRequires: R-timechange
BuildRequires: R-utf8
BuildRequires: R-clipr
BuildRequires: R-crayon
BuildRequires: R-hms
BuildRequires: R-vroom
BuildRequires: R-cpp11-devel
BuildRequires: R-tzdb
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-RColorBrewer
BuildRequires: R-pkgconfig
BuildRequires: R-bit64
BuildRequires: R-progress
BuildRequires: R-bit
BuildRequires: R-prettyunits
BuildRequires: gcc gcc-c++ gcc-fortran
Suggests: R-abind
Suggests: R-covr
Suggests: R-gridExtra
Suggests: R-knitr
Suggests: R-magick
Suggests: R-matrixStats
Suggests: R-pacman
Suggests: R-rmarkdown
Suggests: R-spelling
Suggests: R-testthat
Suggests: R-tidyr
%description
Calculation of molecular number and brightness from fluorescence
microscopy image series. The software was published in a 2016 paper
<doi:10.1093/bioinformatics/btx434>. The seminal paper for the
technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A
review of the technique was published in 2017
<doi:10.1016/j.ymeth.2017.12.001>.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/WORDLIST
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/extdata
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
%changelog
