File R-nph.spec of Package R-nph

# Automatically generated by CRAN2OBS
# 
# Spec file for package nph 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  nph 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        2.1 
Release:        0 
Summary:        Planning and Analysing Survival Studies under Non-Proportional Hazards 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         nph_2.1.tar.gz 
Requires:       R-base 
Requires:	R-mvtnorm
Requires:	R-ggplot2
Requires:	R-muhaz
Requires:	R-multcomp
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-rlang
Requires:	R-S7
Requires:	R-scales
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-TH.data
Requires:	R-sandwich
Requires:	R-glue
Requires:	R-cpp11
Requires:	R-zoo
Requires:	R-farver
Requires:	R-labeling
Requires:	R-R6
Requires:	R-RColorBrewer
Requires:	R-viridisLite
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-ggplot2
BuildRequires: 	R-muhaz
BuildRequires: 	R-multcomp
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-rlang
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-TH.data
BuildRequires: 	R-sandwich
BuildRequires: 	R-glue
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-zoo
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-R6
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
 
Suggests:	R-knitr
Suggests:	R-shiny
Suggests:	R-shinycssloaders
Suggests:	R-formatR
Suggests:	R-styler
Suggests:	R-rmarkdown
%description 
Piecewise constant hazard functions are used to flexibly model survival 
distributions with non-proportional hazards and to simulate data from 
the specified distributions. A function to calculate weighted log-rank 
tests for the comparison of two hazard functions is included. Also, a 
function to calculate a test using the maximum of a set of test 
statistics from weighted log-rank tests (MaxCombo test) is provided. 
This test utilizes the asymptotic multivariate normal joint 
distribution of the separate test statistics. The correlation is 
estimated from the data. These methods are described in Ristl et al. 
(2021) <doi:10.1002/pst.2062>. Finally, a function is provided for the 
estimation and inferential statistics of various parameters that 
quantify the difference between two survival curves. Eligible 
parameters are differences in survival probabilities, log survival 
probabilities, complementary log log (cloglog) transformed survival 
probabilities, quantiles of the survival functions, log transformed 
quantiles, restricted mean survival times, as well as an average hazard 
ratio, the Cox model score statistic (logrank statistic), and the 
Cox-model hazard ratio. Adjustments for multiple testing and 
simultaneous confidence intervals are calculated using a multivariate 
normal approximation to the set of selected parameters. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/shiny
 
%changelog