File R-phacking.spec of Package R-phacking

# Automatically generated by CRAN2OBS
# 
# Spec file for package phacking 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  phacking 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.2.1 
Release:        0 
Summary:        Sensitivity Analysis for p-Hacking in Meta-Analyses 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         phacking_0.2.1.tar.gz 
Requires:       R-base 
Requires:	R-dplyr
Requires:	R-ggplot2
Requires:	R-metabias
Requires:	R-metafor
Requires:	R-purrr
Requires:	R-rlang
Requires:	R-truncnorm
Requires:	R-Rcpp
Requires:	R-RcppParallel
Requires:	R-Rdpack
Requires:	R-rstan
Requires:	R-rstantools
Requires:	R-BH
Requires:	R-RcppEigen
Requires:	R-StanHeaders
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-scales
Requires:	R-withr
Requires:	R-metadat
Requires:	R-numDeriv
Requires:	R-mathjaxr
Requires:	R-pbapply
Requires:	R-digest
Requires:	R-rbibutils
Requires:	R-inline
Requires:	R-gridExtra
Requires:	R-loo
Requires:	R-pkgbuild
Requires:	R-QuickJSR
Requires:	R-desc
Requires:	R-cpp11
Requires:	R-checkmate
Requires:	R-matrixStats
Requires:	R-posterior
Requires:	R-utf8
Requires:	R-callr
Requires:	R-processx
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-pkgconfig
Requires:	R-backports
Requires:	R-abind
Requires:	R-tensorA
Requires:	R-distributional
Requires:	R-ps
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-dplyr
BuildRequires: 	R-ggplot2
BuildRequires: 	R-metabias
BuildRequires: 	R-metafor
BuildRequires: 	R-purrr
BuildRequires: 	R-rlang
BuildRequires: 	R-truncnorm
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppParallel-devel
BuildRequires: 	R-Rdpack
BuildRequires: 	R-rstan-devel
BuildRequires: 	R-rstantools
BuildRequires: 	R-BH-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-StanHeaders-devel
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-withr
BuildRequires: 	R-metadat
BuildRequires: 	R-numDeriv
BuildRequires: 	R-mathjaxr
BuildRequires: 	R-pbapply
BuildRequires: 	R-digest
BuildRequires: 	R-rbibutils
BuildRequires: 	R-inline
BuildRequires: 	R-gridExtra
BuildRequires: 	R-loo
BuildRequires: 	R-pkgbuild
BuildRequires: 	R-QuickJSR-devel
BuildRequires: 	R-desc
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-checkmate
BuildRequires: 	R-matrixStats
BuildRequires: 	R-posterior
BuildRequires: 	R-utf8
BuildRequires: 	R-callr
BuildRequires: 	R-processx
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-backports
BuildRequires: 	R-abind
BuildRequires: 	R-tensorA
BuildRequires: 	R-distributional
BuildRequires: 	R-ps
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-testthat
%description 
Fits right-truncated meta-analysis (RTMA), a bias correction for the 
joint effects of p-hacking (i.e., manipulation of results within 
studies to obtain significant, positive estimates) and traditional 
publication bias (i.e., the selective publication of studies with 
significant, positive results) in meta-analyses [see Mathur MB (2022). 
"Sensitivity analysis for p-hacking in meta-analyses." 
<doi:10.31219/osf.io/ezjsx>.]. Unlike publication bias alone, p-hacking 
that favors significant, positive results (termed "affirmative") can 
distort the distribution of affirmative results. To bias-correct 
results from affirmative studies would require strong assumptions on 
the exact nature of p-hacking. In contrast, joint p-hacking and 
publication bias do not distort the distribution of published 
nonaffirmative results when there is stringent p-hacking (e.g., 
investigators who hack always eventually obtain an affirmative result) 
or when there is stringent publication bias (e.g., nonaffirmative 
results from hacked studies are never published). This means that any 
published nonaffirmative results are from unhacked studies. Under these 
assumptions, RTMA involves analyzing only the published nonaffirmative 
results to essentially impute the full underlying distribution of all 
results prior to selection due to p-hacking and/or publication bias. 
The package also provides diagnostic plots described in Mathur (2022). 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/WORDLIST
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/include
%{rlibdir}/%{packname}/libs
%{rlibdir}/%{packname}/stan
 
%changelog