File R-phase1PRMD.spec of Package R-phase1PRMD

# Automatically generated by CRAN2OBS
# 
# Spec file for package phase1PRMD 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
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%global packname  phase1PRMD 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0.2 
Release:        0 
Summary:        Personalized Repeated Measurement Design for Phase I Clinical Trials 
Group:          Development/Libraries/Other 
License:        GPL (>= 2) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         phase1PRMD_1.0.2.tar.gz 
Requires:       R-base 
Requires:	R-coda
Requires:	R-ggplot2
Requires:	R-rjags
Requires:	R-arrayhelpers
Requires:	R-reshape2
Requires:	R-plyr
Requires:	R-dplyr
Requires:	R-RColorBrewer
Requires:	R-gridExtra
Requires:	R-kableExtra
Requires:	R-knitr
Requires:	R-svUnit
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-R6
Requires:	R-rlang
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-scales
Requires:	R-withr
Requires:	R-stringr
Requires:	R-xml2
Requires:	R-rmarkdown
Requires:	R-viridisLite
Requires:	R-htmltools
Requires:	R-rstudioapi
Requires:	R-digest
Requires:	R-svglite
Requires:	R-evaluate
Requires:	R-highr
Requires:	R-xfun
Requires:	R-yaml
Requires:	R-Rcpp
Requires:	R-base64enc
Requires:	R-fastmap
Requires:	R-utf8
Requires:	R-bslib
Requires:	R-fontawesome
Requires:	R-jquerylib
Requires:	R-jsonlite
Requires:	R-tinytex
Requires:	R-farver
Requires:	R-labeling
Requires:	R-stringi
Requires:	R-systemfonts
Requires:	R-textshaping
Requires:	R-cpp11
Requires:	R-pkgconfig
Requires:	R-cachem
Requires:	R-memoise
Requires:	R-mime
Requires:	R-sass
Requires:	R-fs
Requires:	R-rappdirs
Requires:	jags
Requires:	jags-devel
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
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# %else 
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BuildRequires:  fdupes 
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%description 
Implements Bayesian phase I repeated measurement design that accounts 
for multidimensional toxicity endpoints and longitudinal efficacy 
measure from multiple treatment cycles. The package provides flags to 
fit a variety of model-based phase I design, including 1 stage models 
with or without individualized dose modification, 3-stage models with 
or without individualized dose modification, etc. Functions are 
provided to recommend dosage selection based on the data collected in 
the available patient cohorts and to simulate trial characteristics 
given design parameters. Yin, Jun, et al. (2017) 
<doi:10.1002/sim.7134>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog