File R-phoenix.spec of Package R-phoenix

# Automatically generated by CRAN2OBS
# 
# Spec file for package phoenix 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  phoenix 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.1.3 
Release:        0 
Summary:        The Phoenix Pediatric Sepsis and Septic Shock Criteria 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         phoenix_1.1.3.tar.gz 
Requires:       R-base 
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
 
Suggests:	R-knitr
Suggests:	R-ggplot2
Suggests:	R-qwraps2
Suggests:	R-reticulate
Suggests:	R-rmarkdown
%description 
Implementation of the Phoenix and Phoenix-8 Sepsis Criteria as 
described in "Development and Validation of the Phoenix Criteria for 
Pediatric Sepsis and Septic Shock" by Sanchez-Pinto, Bennett, DeWitt, 
Russell et al. (2024) <doi:10.1001/jama.2024.0196> (Drs. Sanchez-Pinto 
and Bennett contributed equally to this manuscript; Dr. DeWitt and Mr. 
Russell contributed equally to the manuscript), "International 
Consensus Criteria for Pediatric Sepsis and Septic Shock" by 
Schlapbach, Watson, Sorce, Argent, et al. (2024) 
<doi:10.1001/jama.2024.0179> (Drs Schlapbach, Watson, Sorce, and Argent 
contributed equally) and the application note "phoenix: an R package 
and Python module for calculating the Phoenix pediatric sepsis score 
and criteria" by DeWitt, Russell, Rebull, Sanchez-Pinto, and Bennett 
(2024) <doi:10.1093/jamiaopen/ooae066>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/WORDLIST
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/phoenix_rubric.md
%{rlibdir}/%{packname}/phoenix_rubric_caption.md
%{rlibdir}/%{packname}/phoenix_rubric_footnotes.md
%{rlibdir}/%{packname}/phoenix_rubric_sans_footnotes.md
 
%changelog