File R-polymapR.spec of Package R-polymapR

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File R-polymapR.spec of Package R-polymapR

# Automatically generated by CRAN2OBS
# 
# Spec file for package polymapR 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2023 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  polymapR 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.1.3 
Release:        0 
Summary:        Linkage Analysis in Outcrossing Polyploids 
Group:          Development/Libraries/Other 
License:        GPL 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         polymapR_1.1.3.tar.gz 
Requires:       R-base 
Requires:	R-doParallel
Requires:	R-foreach
Requires:	R-igraph
Requires:	R-knitr
Requires:	R-MDSMap
Requires:	R-iterators
Requires:	R-magrittr
Requires:	R-pkgconfig
Requires:	R-rlang
Requires:	R-cpp11
Requires:	R-evaluate
Requires:	R-highr
Requires:	R-xfun
Requires:	R-yaml
Requires:	R-smacof
Requires:	R-princurve
Requires:	R-rgl
Requires:	R-reshape
Requires:	R-Rcpp
Requires:	R-plyr
Requires:	R-htmlwidgets
Requires:	R-htmltools
Requires:	R-jsonlite
Requires:	R-R6
Requires:	R-base64enc
Requires:	R-mime
Requires:	R-plotrix
Requires:	R-colorspace
Requires:	R-e1071
Requires:	R-polynom
Requires:	R-Hmisc
Requires:	R-nnls
Requires:	R-weights
Requires:	R-ellipse
Requires:	R-wordcloud
Requires:	R-candisc
Requires:	R-car
Requires:	R-heplots
Requires:	R-proxy
Requires:	R-ggplot2
Requires:	R-gtable
Requires:	R-gridExtra
Requires:	R-data.table
Requires:	R-htmlTable
Requires:	R-viridis
Requires:	R-rmarkdown
Requires:	R-Formula
Requires:	R-digest
Requires:	R-fastmap
Requires:	R-ellipsis
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Requires:	R-gdata
Requires:	R-lme4
Requires:	R-RColorBrewer
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Requires:	R-numDeriv
Requires:	R-SparseM
Requires:	R-MatrixModels
Requires:	R-farver
Requires:	R-labeling
Requires:	R-munsell
Requires:	R-stringi
Requires:	R-fansi
Requires:	R-utf8
Requires:	R-fs
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Requires:	R-ps
Requires:	R-waldo
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# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-doParallel
BuildRequires: 	R-foreach
BuildRequires: 	R-igraph
BuildRequires: 	R-knitr
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Suggests:	R-ggplot2
Suggests:	R-hexbin
Suggests:	R-Hmisc
Suggests:	R-RColorBrewer
Suggests:	R-reshape2
Suggests:	R-rmarkdown
Suggests:	R-polyRAD
Suggests:	R-updog
Suggests:	R-mappoly
%description 
Creation of linkage maps in polyploid species from marker dosage scores 
of an F1 cross from two heterozygous parents. Currently works for 
outcrossing diploid, autotriploid, autotetraploid and autohexaploid 
species, as well as segmental allotetraploids. Methods are described in 
a manuscript of Bourke et al. (2018) 
<doi:10.1093/bioinformatics/bty371>. Since version 1.1.0, both discrete 
and probabilistic genotypes are acceptable input; for more details on 
the latter see Liao et al. (2021) <doi:10.1007/s00122-021-03834-x>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog

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File R-polymapR.spec of Package R-polymapR

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