File R-psBayesborrow.spec of Package R-psBayesborrow

# Automatically generated by CRAN2OBS
# 
# Spec file for package psBayesborrow 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  psBayesborrow 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.1.0 
Release:        0 
Summary:        Bayesian Information Borrowing with Propensity Score Matching 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         psBayesborrow_1.1.0.tar.gz 
Requires:       R-base 
Requires:	R-copula
Requires:	R-Rcpp
Requires:	R-RcppParallel
Requires:	R-rstan
Requires:	R-rstantools
Requires:	R-MatchIt
Requires:	R-optmatch
Requires:	R-e1071
Requires:	R-overlapping
Requires:	R-BH
Requires:	R-RcppEigen
Requires:	R-StanHeaders
Requires:	R-colorspace
Requires:	R-gsl
Requires:	R-ADGofTest
Requires:	R-stabledist
Requires:	R-mvtnorm
Requires:	R-pcaPP
Requires:	R-pspline
Requires:	R-numDeriv
Requires:	R-proxy
Requires:	R-backports
Requires:	R-chk
Requires:	R-rlang
Requires:	R-RcppProgress
Requires:	R-dplyr
Requires:	R-tibble
Requires:	R-rlemon
Requires:	R-ggplot2
Requires:	R-testthat
Requires:	R-inline
Requires:	R-gridExtra
Requires:	R-loo
Requires:	R-pkgbuild
Requires:	R-QuickJSR
Requires:	R-desc
Requires:	R-lifecycle
Requires:	R-cli
Requires:	R-R6
Requires:	R-generics
Requires:	R-glue
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-scales
Requires:	R-withr
Requires:	R-checkmate
Requires:	R-matrixStats
Requires:	R-posterior
Requires:	R-callr
Requires:	R-processx
Requires:	R-brio
Requires:	R-digest
Requires:	R-evaluate
Requires:	R-jsonlite
Requires:	R-pkgload
Requires:	R-praise
Requires:	R-ps
Requires:	R-waldo
Requires:	R-pkgconfig
Requires:	R-utf8
Requires:	R-fs
Requires:	R-rprojroot
Requires:	R-abind
Requires:	R-tensorA
Requires:	R-distributional
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-diffobj
Requires:	R-crayon
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-copula
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppParallel-devel
BuildRequires: 	R-rstan-devel
BuildRequires: 	R-rstantools
BuildRequires: 	R-MatchIt
BuildRequires: 	R-optmatch
BuildRequires: 	R-e1071
BuildRequires: 	R-overlapping
BuildRequires: 	R-BH-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-StanHeaders-devel
BuildRequires: 	R-colorspace
BuildRequires: 	R-gsl
BuildRequires: 	R-ADGofTest
BuildRequires: 	R-stabledist
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-pcaPP
BuildRequires: 	R-pspline
BuildRequires: 	R-numDeriv
BuildRequires: 	R-proxy
BuildRequires: 	R-backports
BuildRequires: 	R-chk
BuildRequires: 	R-rlang
BuildRequires: 	R-RcppProgress
BuildRequires: 	R-dplyr
BuildRequires: 	R-tibble
BuildRequires: 	R-rlemon-devel
BuildRequires: 	R-ggplot2
BuildRequires: 	R-testthat
BuildRequires: 	R-inline
BuildRequires: 	R-gridExtra
BuildRequires: 	R-loo
BuildRequires: 	R-pkgbuild
BuildRequires: 	R-QuickJSR-devel
BuildRequires: 	R-desc
BuildRequires: 	R-lifecycle
BuildRequires: 	R-cli
BuildRequires: 	R-R6
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-withr
BuildRequires: 	R-checkmate
BuildRequires: 	R-matrixStats
BuildRequires: 	R-posterior
BuildRequires: 	R-callr
BuildRequires: 	R-processx
BuildRequires: 	R-brio
BuildRequires: 	R-digest
BuildRequires: 	R-evaluate
BuildRequires: 	R-jsonlite
BuildRequires: 	R-pkgload
BuildRequires: 	R-praise
BuildRequires: 	R-ps
BuildRequires: 	R-waldo
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-utf8
BuildRequires: 	R-fs
BuildRequires: 	R-rprojroot
BuildRequires: 	R-abind
BuildRequires: 	R-tensorA
BuildRequires: 	R-distributional
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-diffobj
BuildRequires: 	R-crayon
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-testthat
%description 
Hybrid control design is a way to borrow information from external 
controls to augment concurrent controls in a randomized controlled 
trial and is expected to overcome the feasibility issue when adequate 
randomized controlled trials cannot be conducted. A major challenge in 
the hybrid control design is its inability to eliminate a prior-data 
conflict caused by systematic imbalances in measured or unmeasured 
confounding factors between patients in the concurrent 
treatment/control group and external controls. To prevent the 
prior-data conflict, a combined use of propensity score matching and 
Bayesian commensurate prior has been proposed in the context of hybrid 
control design. The propensity score matching is first performed to 
guarantee the balance in baseline characteristics, and then the 
Bayesian commensurate prior is constructed while discounting the 
information based on the similarity in outcomes between the concurrent 
and external controls. 'psBayesborrow' is a package to implement the 
propensity score matching and the Bayesian analysis with commensurate 
prior, as well as to conduct a simulation study to assess operating 
characteristics of the hybrid control design, where users can choose 
design parameters in flexible and straightforward ways depending on 
their own application. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/include
%{rlibdir}/%{packname}/libs
%{rlibdir}/%{packname}/stan
 
%changelog