File R-pssmooth.spec of Package R-pssmooth

# Automatically generated by CRAN2OBS
# 
# Spec file for package pssmooth 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
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# published by the Open Source Initiative. 
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# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
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%global packname  pssmooth 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0.3 
Release:        0 
Summary:        Flexible and Efficient Evaluation of Principal Surrogates/Treatment Effect Modifiers 
Group:          Development/Libraries/Other 
License:        GPL-2 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         pssmooth_1.0.3.tar.gz 
Requires:       R-base 
Requires:	R-osDesign
Requires:	R-np
Requires:	R-chngpt
Requires:	R-kyotil
Requires:	R-lme4
Requires:	R-RhpcBLASctl
Requires:	R-cubature
Requires:	R-quadprog
Requires:	R-quantreg
Requires:	R-Rcpp
Requires:	R-Rdpack
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-reformulas
Requires:	R-rlang
Requires:	R-RcppEigen
Requires:	R-SparseM
Requires:	R-MatrixModels
Requires:	R-rbibutils
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-osDesign
BuildRequires: 	R-np
BuildRequires: 	R-chngpt
BuildRequires: 	R-kyotil
BuildRequires: 	R-lme4
BuildRequires: 	R-RhpcBLASctl
BuildRequires: 	R-cubature
BuildRequires: 	R-quadprog
BuildRequires: 	R-quantreg
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-Rdpack
BuildRequires: 	R-minqa
BuildRequires: 	R-nloptr
BuildRequires: 	R-reformulas
BuildRequires: 	R-rlang
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-SparseM
BuildRequires: 	R-MatrixModels
BuildRequires: 	R-rbibutils
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
%description 
Implements estimation and testing procedures for evaluating an 
intermediate biomarker response as a principal surrogate of a clinical 
response to treatment (i.e., principal stratification effect 
modification analysis), as described in Juraska M, Huang Y, and Gilbert 
PB (2020), Inference on treatment effect modification by biomarker 
response in a three-phase sampling design, Biostatistics, 21(3): 
545-560 <doi:10.1093/biostatistics/kxy074>. The methods avoid the 
restrictive 'placebo structural risk' modeling assumption common to 
past methods and further improve robustness by the use of nonparametric 
kernel smoothing for biomarker density estimation. A randomized 
controlled two-group clinical efficacy trial is assumed with an ordered 
categorical or continuous univariate biomarker response measured at a 
fixed timepoint post-randomization and with a univariate baseline 
surrogate measure allowed to be observed in only a subset of trial 
participants with an observed biomarker response (see the flexible 
three-phase sampling design in the paper for details). Bootstrap-based 
procedures are available for pointwise and simultaneous confidence 
intervals and testing of four relevant hypotheses. Summary and plotting 
functions are provided for estimation results. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS
%{rlibdir}/%{packname}/R
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog