File R-pwrFDR.spec of Package R-pwrFDR
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# Spec file for package pwrFDR
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
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%global packname pwrFDR
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 3.2.4
Release: 0
Summary: FDR Power
Group: Development/Libraries/Other
License: GPL (>= 2)
URL: http://cran.r-project.org/web/packages/%{packname}
Source: pwrFDR_3.2.4.tar.gz
Requires: R-base
Requires: R-flextable
Requires: R-ggplot2
Requires: R-mvtnorm
Requires: R-stringr
Requires: R-TableMonster
Requires: R-data.table
Requires: R-gdtools
Requires: R-htmltools
Requires: R-knitr
Requires: R-officer
Requires: R-ragg
Requires: R-rlang
Requires: R-rmarkdown
Requires: R-uuid
Requires: R-xml2
Requires: R-cli
Requires: R-gtable
Requires: R-isoband
Requires: R-lifecycle
Requires: R-S7
Requires: R-scales
Requires: R-vctrs
Requires: R-withr
Requires: R-glue
Requires: R-magrittr
Requires: R-stringi
Requires: R-xtable
Requires: R-fontquiver
Requires: R-Rcpp
Requires: R-systemfonts
Requires: R-base64enc
Requires: R-digest
Requires: R-fastmap
Requires: R-evaluate
Requires: R-highr
Requires: R-xfun
Requires: R-yaml
Requires: R-dplyr
Requires: R-openssl
Requires: R-R6
Requires: R-tidyr
Requires: R-zip
Requires: R-textshaping
Requires: R-bslib
Requires: R-fontawesome
Requires: R-jquerylib
Requires: R-jsonlite
Requires: R-tinytex
Requires: R-farver
Requires: R-labeling
Requires: R-RColorBrewer
Requires: R-viridisLite
Requires: R-cachem
Requires: R-memoise
Requires: R-mime
Requires: R-sass
Requires: R-generics
Requires: R-pillar
Requires: R-tibble
Requires: R-tidyselect
Requires: R-fontBitstreamVera
Requires: R-fontLiberation
Requires: R-askpass
Requires: R-cpp11
Requires: R-purrr
Requires: R-sys
Requires: R-utf8
Requires: R-fs
Requires: R-rappdirs
Requires: R-pkgconfig
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
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# %else
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# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
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BuildRequires: R-ggplot2
BuildRequires: R-mvtnorm
BuildRequires: R-stringr
BuildRequires: R-TableMonster
BuildRequires: R-data.table
BuildRequires: R-gdtools
BuildRequires: R-htmltools
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%description
Computing Average and TPX Power under various BHFDR type sequential
procedures. All of these procedures involve control of some summary of
the distribution of the FDP, e.g. the proportion of discoveries which
are false in a given experiment. The most widely known of these, the
BH-FDR procedure, controls the FDR which is the mean of the FDP. A
lesser known procedure, due to Lehmann and Romano, controls the FDX, or
probability that the FDP exceeds a user provided threshold. This is
less conservative than FWE control procedures but much more
conservative than the BH-FDR proceudre. This package and the references
supporting it introduce a new procedure for controlling the FDX which
we call the BH-FDX procedure. This procedure iteratively identifies,
given alpha and lower threshold delta, an alpha* less than alpha at
which BH-FDR guarantees FDX control. This uses asymptotic
approximation and is only slightly more conservative than the BH-FDR
procedure. Likewise, we can think of the power in multiple testing
experiments in terms of a summary of the distribution of the True
Positive Proportion (TPP), the portion of tests truly non-null
distributed that are called significant. The package will compute
power, sample size or any other missing parameter required for power
defined as (i) the mean of the TPP (average power) or (ii) the
probability that the TPP exceeds a given value, lambda, (TPX power) via
asymptotic approximation. All supplied theoretical results are also
obtainable via simulation. The suggested approach is to narrow in on a
design via the theoretical approaches and then make final
adjustments/verify the results by simulation. The theoretical results
are described in Izmirlian, G (2020) Statistics and Probability
letters, "<doi:10.1016/j.spl.2020.108713>", and an applied paper
describing the methodology with a simulation study is in preparation.
See citation("pwrFDR").
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/developer-notes.txt
%doc %{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/notes.txt
%changelog
