File R-rCNV.spec of Package R-rCNV

# Automatically generated by CRAN2OBS
# 
# Spec file for package rCNV 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
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%global packname  rCNV 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.3.0 
Release:        0 
Summary:        Detect Copy Number Variants from SNPs Data 
Group:          Development/Libraries/Other 
License:        AGPL (>= 3) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         rCNV_1.3.0.tar.gz 
Requires:       R-base 
Requires:	R-data.table
Requires:	R-colorspace
Requires:	R-R.utils
Requires:	R-qgraph
Requires:	R-stringr
Requires:	R-Rcpp
Requires:	R-psych
Requires:	R-lavaan
Requires:	R-plyr
Requires:	R-Hmisc
Requires:	R-igraph
Requires:	R-jpeg
Requires:	R-png
Requires:	R-corpcor
Requires:	R-reshape2
Requires:	R-ggplot2
Requires:	R-glasso
Requires:	R-fdrtool
Requires:	R-gtools
Requires:	R-pbapply
Requires:	R-abind
Requires:	R-R.oo
Requires:	R-R.methodsS3
Requires:	R-cli
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-rlang
Requires:	R-stringi
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-scales
Requires:	R-withr
Requires:	R-gridExtra
Requires:	R-htmlTable
Requires:	R-viridis
Requires:	R-htmltools
Requires:	R-base64enc
Requires:	R-rmarkdown
Requires:	R-knitr
Requires:	R-Formula
Requires:	R-pkgconfig
Requires:	R-cpp11
Requires:	R-mnormt
Requires:	R-pbivnorm
Requires:	R-numDeriv
Requires:	R-quadprog
Requires:	R-GPArotation
Requires:	R-checkmate
Requires:	R-htmlwidgets
Requires:	R-rstudioapi
Requires:	R-digest
Requires:	R-fastmap
Requires:	R-evaluate
Requires:	R-highr
Requires:	R-xfun
Requires:	R-yaml
Requires:	R-bslib
Requires:	R-fontawesome
Requires:	R-jquerylib
Requires:	R-jsonlite
Requires:	R-tinytex
Requires:	R-farver
Requires:	R-labeling
Requires:	R-R6
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-cachem
Requires:	R-memoise
Requires:	R-mime
Requires:	R-sass
Requires:	R-backports
Requires:	R-fs
Requires:	R-rappdirs
 
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BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-data.table
BuildRequires: 	R-colorspace
BuildRequires: 	R-R.utils
BuildRequires: 	R-qgraph
BuildRequires: 	R-stringr
BuildRequires: 	R-Rcpp-devel
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BuildRequires: 	R-sass
BuildRequires: 	R-backports
BuildRequires: 	R-fs
BuildRequires: 	R-rappdirs
 
Suggests:	R-rmarkdown
Suggests:	R-knitr
Suggests:	R-testthat
Suggests:	R-covr
%description 
Functions in this package will import filtered variant call format 
(VCF) files of SNPs data and generate data sets to detect copy number 
variants, visualize them and do downstream analyses with copy number 
variants(e.g. Environmental association analyses). 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/example.raw.vcf.gz
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog