File R-ranktreeEnsemble.spec of Package R-ranktreeEnsemble
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# Spec file for package ranktreeEnsemble
# This file is auto-generated using information in the package source,
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%global packname ranktreeEnsemble
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 0.24
Release: 0
Summary: Ensemble Models of Rank-Based Trees with Extracted Decision Rules
Group: Development/Libraries/Other
License: GPL (>= 2)
URL: http://cran.r-project.org/web/packages/%{packname}
Source: ranktreeEnsemble_0.24.tar.gz
Requires: R-base
Requires: R-Rcpp
Requires: R-randomForestSRC
Requires: R-gbm
Requires: R-data.tree
Requires: R-R6
Requires: R-stringi
Requires: R-DiagrammeR
Requires: R-dplyr
Requires: R-glue
Requires: R-htmltools
Requires: R-htmlwidgets
Requires: R-igraph
Requires: R-magrittr
Requires: R-purrr
Requires: R-RColorBrewer
Requires: R-readr
Requires: R-rlang
Requires: R-cli
Requires: R-rstudioapi
Requires: R-scales
Requires: R-stringr
Requires: R-tibble
Requires: R-tidyr
Requires: R-viridisLite
Requires: R-visNetwork
Requires: R-generics
Requires: R-lifecycle
Requires: R-pillar
Requires: R-tidyselect
Requires: R-vctrs
Requires: R-base64enc
Requires: R-digest
Requires: R-fastmap
Requires: R-jsonlite
Requires: R-knitr
Requires: R-rmarkdown
Requires: R-yaml
Requires: R-pkgconfig
Requires: R-cpp11
Requires: R-clipr
Requires: R-crayon
Requires: R-hms
Requires: R-vroom
Requires: R-tzdb
Requires: R-farver
Requires: R-labeling
Requires: R-evaluate
Requires: R-highr
Requires: R-xfun
Requires: R-utf8
Requires: R-bslib
Requires: R-fontawesome
Requires: R-jquerylib
Requires: R-tinytex
Requires: R-withr
Requires: R-bit64
Requires: R-progress
Requires: R-bit
Requires: R-cachem
Requires: R-memoise
Requires: R-mime
Requires: R-sass
Requires: R-prettyunits
Requires: R-fs
Requires: R-rappdirs
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-Rcpp-devel
BuildRequires: R-randomForestSRC
BuildRequires: R-gbm
BuildRequires: R-data.tree
BuildRequires: R-R6
BuildRequires: R-stringi
BuildRequires: R-DiagrammeR
BuildRequires: R-dplyr
BuildRequires: R-glue
BuildRequires: R-htmltools
BuildRequires: R-htmlwidgets
BuildRequires: R-igraph
BuildRequires: R-magrittr
BuildRequires: R-purrr
BuildRequires: R-RColorBrewer
BuildRequires: R-readr
BuildRequires: R-rlang
BuildRequires: R-cli
BuildRequires: R-rstudioapi
BuildRequires: R-scales
BuildRequires: R-stringr
BuildRequires: R-tibble
BuildRequires: R-tidyr
BuildRequires: R-viridisLite
BuildRequires: R-visNetwork
BuildRequires: R-generics
BuildRequires: R-lifecycle
BuildRequires: R-pillar
BuildRequires: R-tidyselect
BuildRequires: R-vctrs
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BuildRequires: R-digest
BuildRequires: R-fastmap
BuildRequires: R-jsonlite
BuildRequires: R-knitr
BuildRequires: R-rmarkdown
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BuildRequires: R-pkgconfig
BuildRequires: R-cpp11-devel
BuildRequires: R-clipr
BuildRequires: R-crayon
BuildRequires: R-hms
BuildRequires: R-vroom
BuildRequires: R-tzdb
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-evaluate
BuildRequires: R-highr
BuildRequires: R-xfun
BuildRequires: R-utf8
BuildRequires: R-bslib
BuildRequires: R-fontawesome
BuildRequires: R-jquerylib
BuildRequires: R-tinytex
BuildRequires: R-withr
BuildRequires: R-bit64
BuildRequires: R-progress
BuildRequires: R-bit
BuildRequires: R-cachem
BuildRequires: R-memoise
BuildRequires: R-mime
BuildRequires: R-sass
BuildRequires: R-prettyunits
BuildRequires: R-fs
BuildRequires: R-rappdirs
BuildRequires: gcc gcc-c++ gcc-fortran
%description
Fast computing an ensemble of rank-based trees via boosting or random
forest on binary and multi-class problems. It converts continuous gene
expression profiles into ranked gene pairs, for which the variable
importance indices are computed and adopted for dimension reduction.
Decision rules can be extracted from trees.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
chmod 644 %{buildroot}%{rlibdir}/%{packname}/NEWS
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
%changelog