File R-rcprd.spec of Package R-rcprd

# Automatically generated by CRAN2OBS
# 
# Spec file for package rcprd 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  rcprd 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.0.2 
Release:        0 
Summary:        Extraction and Management of Clinical Practice Research Datalink Data 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         rcprd_0.0.2.tar.gz 
Requires:       R-base 
Requires:	R-dplyr
Requires:	R-data.table
Requires:	R-fastmatch
Requires:	R-lubridate
Requires:	R-RSQLite
Requires:	R-stringr
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-R6
Requires:	R-rlang
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-timechange
Requires:	R-bit64
Requires:	R-blob
Requires:	R-DBI
Requires:	R-memoise
Requires:	R-pkgconfig
Requires:	R-cpp11
Requires:	R-stringi
Requires:	R-bit
Requires:	R-cachem
Requires:	R-utf8
Requires:	R-withr
Requires:	R-fastmap
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-dplyr
BuildRequires: 	R-data.table
BuildRequires: 	R-fastmatch
BuildRequires: 	R-lubridate
BuildRequires: 	R-RSQLite
BuildRequires: 	R-stringr
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-rlang
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-timechange
BuildRequires: 	R-bit64
BuildRequires: 	R-blob
BuildRequires: 	R-DBI
BuildRequires: 	R-memoise
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-stringi
BuildRequires: 	R-bit
BuildRequires: 	R-cachem
BuildRequires: 	R-utf8
BuildRequires: 	R-withr
BuildRequires: 	R-fastmap
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-testthat
%description 
Simplify the process of extracting and processing Clinical Practice 
Research Datalink (CPRD) data in order to build datasets ready for 
statistical analysis. This process is difficult in 'R', as the raw data 
is very large and cannot be read into the R workspace. 'rcprd' utilises 
'RSQLite' to create 'SQLite' databases which are stored on the hard 
disk. These are then queried to extract the required information for a 
cohort of interest, and create datasets ready for statistical analysis. 
The processes follow closely that from the 'rEHR' package, see 
Springate et al., (2017) <doi:10.1371/journal.pone.0171784>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/aurum_data
%{rlibdir}/%{packname}/codelists
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/example
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog