File R-readyomics.spec of Package R-readyomics

# Automatically generated by CRAN2OBS
# 
# Spec file for package readyomics 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  readyomics 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.2.0 
Release:        0 
Summary:        Ready-to-Use Omics Formatting, Analysis, and Visualization Pipeline 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         readyomics_0.2.0.tar.gz 
Requires:       R-base 
Requires:	R-dplyr
Requires:	R-future
Requires:	R-future.apply
Requires:	R-ggplot2
Requires:	R-lme4
Requires:	R-lmerTest
Requires:	R-permute
Requires:	R-rlang
Requires:	R-stringr
Requires:	R-tidyr
Requires:	R-vegan
Requires:	R-zCompositions
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-digest
Requires:	R-globals
Requires:	R-listenv
Requires:	R-parallelly
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-scales
Requires:	R-withr
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-reformulas
Requires:	R-Rcpp
Requires:	R-RcppEigen
Requires:	R-numDeriv
Requires:	R-stringi
Requires:	R-purrr
Requires:	R-cpp11
Requires:	R-truncnorm
Requires:	R-utf8
Requires:	R-Rdpack
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-pkgconfig
Requires:	R-rbibutils
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-dplyr
BuildRequires: 	R-future
BuildRequires: 	R-future.apply
BuildRequires: 	R-ggplot2
BuildRequires: 	R-lme4
BuildRequires: 	R-lmerTest
BuildRequires: 	R-permute
BuildRequires: 	R-rlang
BuildRequires: 	R-stringr
BuildRequires: 	R-tidyr
BuildRequires: 	R-vegan
BuildRequires: 	R-zCompositions
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-digest
BuildRequires: 	R-globals
BuildRequires: 	R-listenv
BuildRequires: 	R-parallelly
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-withr
BuildRequires: 	R-minqa
BuildRequires: 	R-nloptr
BuildRequires: 	R-reformulas
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-numDeriv
BuildRequires: 	R-stringi
BuildRequires: 	R-purrr
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-truncnorm
BuildRequires: 	R-utf8
BuildRequires: 	R-Rdpack
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-rbibutils
 
Suggests:	R-ape
Suggests:	R-data.table
Suggests:	R-ggrepel
Suggests:	R-ggridges
Suggests:	R-IHW
Suggests:	R-imputeLCMD
Suggests:	R-knitr
Suggests:	R-phyloseq
Suggests:	R-progressr
Suggests:	R-purrr
Suggests:	R-qvalue
Suggests:	R-rmarkdown
Suggests:	R-ropls
Suggests:	R-scales
Suggests:	R-testthat
%description 
Provides a flexible and streamlined pipeline for formatting, analyzing, 
and visualizing omics data, regardless of omics type (e.g. 
transcriptomics, proteomics, metabolomics). The package includes tools 
for shaping input data into analysis-ready structures, fitting linear 
or mixed-effect models, extracting key contrasts, and generating a rich 
variety of ready-to-use publication-quality plots. Designed for 
transparency and reproducibility across a wide range of study designs, 
with customizable components for statistical modeling. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%doc %{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/extdata
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog