File R-scSpatialSIM.spec of Package R-scSpatialSIM

# Automatically generated by CRAN2OBS
# 
# Spec file for package scSpatialSIM 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
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# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  scSpatialSIM 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.4 
Release:        0 
Summary:        A Point Pattern Simulator for Spatial Cellular Data 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         scSpatialSIM_0.1.4.tar.gz 
Requires:       R-base 
Requires:	R-dplyr
Requires:	R-ggplot2
Requires:	R-magrittr
Requires:	R-spatstat.geom
Requires:	R-crayon
Requires:	R-ggpubr
Requires:	R-pbmcapply
Requires:	R-spatstat.random
Requires:	R-tidyr
Requires:	R-proxy
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-pillar
Requires:	R-R6
Requires:	R-rlang
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-scales
Requires:	R-withr
Requires:	R-ggrepel
Requires:	R-ggsci
Requires:	R-purrr
Requires:	R-cowplot
Requires:	R-ggsignif
Requires:	R-gridExtra
Requires:	R-polynom
Requires:	R-rstatix
Requires:	R-spatstat.data
Requires:	R-spatstat.univar
Requires:	R-spatstat.utils
Requires:	R-deldir
Requires:	R-polyclip
Requires:	R-stringr
Requires:	R-cpp11
Requires:	R-Rcpp
Requires:	R-utf8
Requires:	R-broom
Requires:	R-corrplot
Requires:	R-car
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-stringi
Requires:	R-pkgconfig
Requires:	R-backports
Requires:	R-carData
Requires:	R-abind
Requires:	R-Formula
Requires:	R-pbkrtest
Requires:	R-quantreg
Requires:	R-lme4
Requires:	R-Rdpack
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-reformulas
Requires:	R-RcppEigen
Requires:	R-numDeriv
Requires:	R-doBy
Requires:	R-SparseM
Requires:	R-MatrixModels
Requires:	R-Deriv
Requires:	R-forecast
Requires:	R-modelr
Requires:	R-microbenchmark
Requires:	R-rbibutils
Requires:	R-colorspace
Requires:	R-fracdiff
Requires:	R-lmtest
Requires:	R-timeDate
Requires:	R-urca
Requires:	R-zoo
Requires:	R-RcppArmadillo
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
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# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
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# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-dplyr
BuildRequires: 	R-ggplot2
BuildRequires: 	R-magrittr
BuildRequires: 	R-spatstat.geom
BuildRequires: 	R-crayon
BuildRequires: 	R-ggpubr
BuildRequires: 	R-pbmcapply
BuildRequires: 	R-spatstat.random
BuildRequires: 	R-tidyr
BuildRequires: 	R-proxy
BuildRequires: 	R-cli
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BuildRequires: 	R-R6
BuildRequires: 	R-rlang
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-withr
BuildRequires: 	R-ggrepel
BuildRequires: 	R-ggsci
BuildRequires: 	R-purrr
BuildRequires: 	R-cowplot
BuildRequires: 	R-ggsignif
BuildRequires: 	R-gridExtra
BuildRequires: 	R-polynom
BuildRequires: 	R-rstatix
BuildRequires: 	R-spatstat.data
BuildRequires: 	R-spatstat.univar
BuildRequires: 	R-spatstat.utils
BuildRequires: 	R-deldir
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BuildRequires: 	R-lmtest
BuildRequires: 	R-timeDate
BuildRequires: 	R-urca
BuildRequires: 	R-zoo
BuildRequires: 	R-RcppArmadillo-devel
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-testthat
Suggests:	R-spatialTIME
Suggests:	R-spdep
%description 
Single cell resolution data has been valuable in learning about tissue 
microenvironments and interactions between cells or spots. This package 
allows for the simulation of this level of data, be it single cell or 
‘spots’, in both a univariate (single metric or cell type) and 
bivariate (2 or more metrics or cell types) ways. As more technologies 
come to marker, more methods will be developed to derive spatial 
metrics from the data which will require a way to benchmark methods 
against each other. Additionally, as the field currently stands, there 
is not a gold standard method to be compared against. We set out to 
develop an R package that will allow users to simulate point patterns 
that can be biologically informed from different tissue domains, holes, 
and varying degrees of clustering/colocalization. The data can be 
exported as spatial files and a summary file (like 'HALO'). 
<https://github.com/FridleyLab/scSpatialSIM/>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog