File R-searchAnalyzeR.spec of Package R-searchAnalyzeR

# Automatically generated by CRAN2OBS
# 
# Spec file for package searchAnalyzeR 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  searchAnalyzeR 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.0 
Release:        0 
Summary:        Advanced Analytics and Testing Framework for Systematic Review Search Strategies 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         searchAnalyzeR_0.1.0.tar.gz 
Requires:       R-base 
Requires:	R-R6
Requires:	R-ggplot2
Requires:	R-openxlsx
Requires:	R-stringdist
Requires:	R-lubridate
Requires:	R-digest
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-rlang
Requires:	R-S7
Requires:	R-scales
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-generics
Requires:	R-timechange
Requires:	R-Rcpp
Requires:	R-stringi
Requires:	R-zip
Requires:	R-glue
Requires:	R-cpp11
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-R6
BuildRequires: 	R-ggplot2
BuildRequires: 	R-openxlsx
BuildRequires: 	R-stringdist
BuildRequires: 	R-lubridate
BuildRequires: 	R-digest
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-rlang
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-generics
BuildRequires: 	R-timechange
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-stringi
BuildRequires: 	R-zip
BuildRequires: 	R-glue
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
 
Suggests:	R-testthat
Suggests:	R-covr
Suggests:	R-dplyr
Suggests:	R-shiny
Suggests:	R-shinydashboard
Suggests:	R-flexdashboard
Suggests:	R-plotly
Suggests:	R-DT
Suggests:	R-pwr
Suggests:	R-progress
Suggests:	R-rmarkdown
Suggests:	R-knitr
Suggests:	R-glue
Suggests:	R-rentrez
Suggests:	R-xml2
Suggests:	R-readr
Suggests:	R-jsonlite
Suggests:	R-revtools
Suggests:	R-tidyr
Suggests:	R-patchwork
Suggests:	R-metagear
%description 
Provides comprehensive analytics, reporting, and testing capabilities 
for systematic review search strategies. The package focuses on 
validating search performance, generating standardized 
'PRISMA'-compliant reports, and ensuring reproducibility in evidence 
synthesis. Features include precision-recall analysis, cross-database 
performance comparison, benchmark validation against gold standards, 
sensitivity analysis, temporal coverage assessment, automated report 
generation, and statistical comparison of search strategies. Supports 
multiple export formats including 'CSV', 'Excel', 'RIS', 'BibTeX', and 
'EndNote'. Includes tools for duplicate detection, search strategy 
optimization, cross-validation frameworks, meta-analysis of benchmark 
results, power analysis for study design, and reproducibility package 
creation. Optionally connects to 'PubMed' for direct database searching 
and real-time strategy comparison using the 'E-utilities' 'API'. 
Enhanced with bootstrap comparison methods, 'McNemar' test for strategy 
evaluation, and comprehensive visualization tools for performance 
assessment. Methods based on Manning et al. (2008) for information 
retrieval metrics, Moher et al. (2009) for 'PRISMA' guidelines, and 
Sampson et al. (2006) for systematic review search methodology. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/examples
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog