File R-secsse.spec of Package R-secsse

# Automatically generated by CRAN2OBS
# 
# Spec file for package secsse 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  secsse 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        3.5.0 
Release:        0 
Summary:        Several Examined and Concealed States-Dependent Speciation and Extinction 
Group:          Development/Libraries/Other 
License:        GPL (>= 3) | file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         secsse_3.5.0.tar.gz 
Requires:       R-base 
Requires:	R-DDD
Requires:	R-ape
Requires:	R-geiger
Requires:	R-Rcpp
Requires:	R-RcppParallel
Requires:	R-ggplot2
Requires:	R-tibble
Requires:	R-rlang
Requires:	R-treestats
Requires:	R-BH
Requires:	R-digest
Requires:	R-deSolve
Requires:	R-phytools
Requires:	R-subplex
Requires:	R-DEoptim
Requires:	R-expm
Requires:	R-SparseM
Requires:	R-RcppEigen
Requires:	R-mvtnorm
Requires:	R-coda
Requires:	R-ncbit
Requires:	R-colorspace
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-S7
Requires:	R-scales
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-pkgconfig
Requires:	R-nloptr
Requires:	R-treebalance
Requires:	R-RcppArmadillo
Requires:	R-glue
Requires:	R-maps
Requires:	R-clusterGeneration
Requires:	R-combinat
Requires:	R-doParallel
Requires:	R-foreach
Requires:	R-mnormt
Requires:	R-numDeriv
Requires:	R-optimParallel
Requires:	R-phangorn
Requires:	R-scatterplot3d
Requires:	R-utf8
Requires:	R-farver
Requires:	R-labeling
Requires:	R-R6
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-memoise
Requires:	R-gmp
Requires:	R-iterators
Requires:	R-cachem
Requires:	R-fastmatch
Requires:	R-generics
Requires:	R-igraph
Requires:	R-quadprog
Requires:	R-fastmap
Requires:	R-cpp11
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-DDD
BuildRequires: 	R-ape
BuildRequires: 	R-geiger
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppParallel-devel
BuildRequires: 	R-ggplot2
BuildRequires: 	R-tibble
BuildRequires: 	R-rlang
BuildRequires: 	R-treestats-devel
BuildRequires: 	R-BH-devel
BuildRequires: 	R-digest
BuildRequires: 	R-deSolve-devel
BuildRequires: 	R-phytools
BuildRequires: 	R-subplex
BuildRequires: 	R-DEoptim
BuildRequires: 	R-expm
BuildRequires: 	R-SparseM
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-coda
BuildRequires: 	R-ncbit
BuildRequires: 	R-colorspace
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-nloptr
BuildRequires: 	R-treebalance
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-glue
BuildRequires: 	R-maps
BuildRequires: 	R-clusterGeneration
BuildRequires: 	R-combinat
BuildRequires: 	R-doParallel
BuildRequires: 	R-foreach
BuildRequires: 	R-mnormt
BuildRequires: 	R-numDeriv
BuildRequires: 	R-optimParallel
BuildRequires: 	R-phangorn
BuildRequires: 	R-scatterplot3d
BuildRequires: 	R-utf8
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-R6
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-memoise
BuildRequires: 	R-gmp
BuildRequires: 	R-iterators
BuildRequires: 	R-cachem
BuildRequires: 	R-fastmatch
BuildRequires: 	R-generics
BuildRequires: 	R-igraph
BuildRequires: 	R-quadprog
BuildRequires: 	R-fastmap
BuildRequires: 	R-cpp11-devel
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-diversitree
Suggests:	R-phytools
Suggests:	R-testthat
Suggests:	R-subplex
Suggests:	R-knitr
Suggests:	R-rmarkdown
%description 
Simultaneously infers state-dependent diversification across two or 
more states of a single or multiple traits while accounting for the 
role of a possible concealed trait. See Herrera-Alsina et al. (2019) 
<doi:10.1093/sysbio/syy057>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%{rlibdir}/%{packname}/COPYRIGHTS
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%license %{rlibdir}/%{packname}/LICENSE_1_0.txt
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
 
%changelog