File R-sgs.spec of Package R-sgs
# Automatically generated by CRAN2OBS
#
# Spec file for package sgs
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
#
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
#
# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
%global packname sgs
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 0.3.7
Release: 0
Summary: Sparse-Group SLOPE: Adaptive Bi-Level Selection with FDR Control
Group: Development/Libraries/Other
License: GPL (>= 3)
URL: http://cran.r-project.org/web/packages/%{packname}
Source: sgs_0.3.7.tar.gz
Requires: R-base
Requires: R-caret
Requires: R-SLOPE
Requires: R-Rlab
Requires: R-Rcpp
Requires: R-RcppArmadillo
Requires: R-ggplot2
Requires: R-e1071
Requires: R-foreach
Requires: R-ModelMetrics
Requires: R-plyr
Requires: R-pROC
Requires: R-recipes
Requires: R-reshape2
Requires: R-withr
Requires: R-proxy
Requires: R-iterators
Requires: R-cli
Requires: R-glue
Requires: R-gtable
Requires: R-isoband
Requires: R-lifecycle
Requires: R-rlang
Requires: R-scales
Requires: R-tibble
Requires: R-vctrs
Requires: R-data.table
Requires: R-dplyr
Requires: R-clock
Requires: R-generics
Requires: R-gower
Requires: R-hardhat
Requires: R-ipred
Requires: R-lubridate
Requires: R-magrittr
Requires: R-purrr
Requires: R-sparsevctrs
Requires: R-tidyr
Requires: R-tidyselect
Requires: R-timeDate
Requires: R-stringr
Requires: R-tzdb
Requires: R-cpp11
Requires: R-pillar
Requires: R-R6
Requires: R-prodlim
Requires: R-timechange
Requires: R-farver
Requires: R-labeling
Requires: R-RColorBrewer
Requires: R-viridisLite
Requires: R-stringi
Requires: R-pkgconfig
Requires: R-utf8
Requires: R-diagram
Requires: R-lava
Requires: R-shape
Requires: R-future.apply
Requires: R-numDeriv
Requires: R-progressr
Requires: R-SQUAREM
Requires: R-future
Requires: R-globals
Requires: R-digest
Requires: R-listenv
Requires: R-parallelly
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-caret
BuildRequires: R-SLOPE
BuildRequires: R-Rlab
BuildRequires: R-Rcpp-devel
BuildRequires: R-RcppArmadillo-devel
BuildRequires: R-ggplot2
BuildRequires: R-e1071
BuildRequires: R-foreach
BuildRequires: R-ModelMetrics
BuildRequires: R-plyr
BuildRequires: R-pROC
BuildRequires: R-recipes
BuildRequires: R-reshape2
BuildRequires: R-withr
BuildRequires: R-proxy
BuildRequires: R-iterators
BuildRequires: R-cli
BuildRequires: R-glue
BuildRequires: R-gtable
BuildRequires: R-isoband
BuildRequires: R-lifecycle
BuildRequires: R-rlang
BuildRequires: R-scales
BuildRequires: R-tibble
BuildRequires: R-vctrs
BuildRequires: R-data.table
BuildRequires: R-dplyr
BuildRequires: R-clock
BuildRequires: R-generics
BuildRequires: R-gower
BuildRequires: R-hardhat
BuildRequires: R-ipred
BuildRequires: R-lubridate
BuildRequires: R-magrittr
BuildRequires: R-purrr
BuildRequires: R-sparsevctrs
BuildRequires: R-tidyr
BuildRequires: R-tidyselect
BuildRequires: R-timeDate
BuildRequires: R-stringr
BuildRequires: R-tzdb
BuildRequires: R-cpp11-devel
BuildRequires: R-pillar
BuildRequires: R-R6
BuildRequires: R-prodlim
BuildRequires: R-timechange
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-RColorBrewer
BuildRequires: R-viridisLite
BuildRequires: R-stringi
BuildRequires: R-pkgconfig
BuildRequires: R-utf8
BuildRequires: R-diagram
BuildRequires: R-lava
BuildRequires: R-shape
BuildRequires: R-future.apply
BuildRequires: R-numDeriv
BuildRequires: R-progressr
BuildRequires: R-SQUAREM
BuildRequires: R-future
BuildRequires: R-globals
BuildRequires: R-digest
BuildRequires: R-listenv
BuildRequires: R-parallelly
BuildRequires: gcc gcc-c++ gcc-fortran
Suggests: R-SGL
Suggests: R-gglasso
Suggests: R-glmnet
Suggests: R-testthat
Suggests: R-knitr
Suggests: R-grpSLOPE
Suggests: R-rmarkdown
%description
Implementation of Sparse-group SLOPE (SGS) (Feser and Evangelou (2023)
<doi:10.48550/arXiv.2305.09467>) models. Linear and logistic regression
models are supported, both of which can be fit using k-fold
cross-validation. Dense and sparse input matrices are supported. In
addition, a general Adaptive Three Operator Splitting (ATOS) (Pedregosa
and Gidel (2018) <doi:10.48550/arXiv.1804.02339>) implementation is
provided. Group SLOPE (gSLOPE) (Brzyski et al. (2019)
<doi:10.1080/01621459.2017.1411269>) and group-based OSCAR models
(Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.15357>) are also
implemented. All models are available with strong screening rules
(Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.15357>) for
computational speed-up.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%doc %{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
%changelog
