File R-shrink.spec of Package R-shrink

# Automatically generated by CRAN2OBS
# 
# Spec file for package shrink 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  shrink 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.2.3 
Release:        0 
Summary:        Global, Parameterwise and Joint Shrinkage Factor Estimation 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         shrink_1.2.3.tar.gz 
Requires:       R-base 
Requires:	R-rms
Requires:	R-mfp
Requires:	R-numDeriv
Requires:	R-Hmisc
Requires:	R-quantreg
Requires:	R-ggplot2
Requires:	R-SparseM
Requires:	R-polspline
Requires:	R-multcomp
Requires:	R-htmlTable
Requires:	R-htmltools
Requires:	R-digest
Requires:	R-colorspace
Requires:	R-knitr
Requires:	R-scales
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-rlang
Requires:	R-S7
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-gridExtra
Requires:	R-data.table
Requires:	R-viridis
Requires:	R-base64enc
Requires:	R-rmarkdown
Requires:	R-Formula
Requires:	R-stringr
Requires:	R-magrittr
Requires:	R-checkmate
Requires:	R-htmlwidgets
Requires:	R-rstudioapi
Requires:	R-fastmap
Requires:	R-evaluate
Requires:	R-highr
Requires:	R-xfun
Requires:	R-yaml
Requires:	R-mvtnorm
Requires:	R-TH.data
Requires:	R-sandwich
Requires:	R-MatrixModels
Requires:	R-farver
Requires:	R-glue
Requires:	R-labeling
Requires:	R-R6
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-backports
Requires:	R-jsonlite
Requires:	R-bslib
Requires:	R-fontawesome
Requires:	R-jquerylib
Requires:	R-tinytex
Requires:	R-zoo
Requires:	R-stringi
Requires:	R-cachem
Requires:	R-memoise
Requires:	R-mime
Requires:	R-sass
Requires:	R-fs
Requires:	R-rappdirs
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-rms
BuildRequires: 	R-mfp
BuildRequires: 	R-numDeriv
BuildRequires: 	R-Hmisc
BuildRequires: 	R-quantreg
BuildRequires: 	R-ggplot2
BuildRequires: 	R-SparseM
BuildRequires: 	R-polspline
BuildRequires: 	R-multcomp
BuildRequires: 	R-htmlTable
BuildRequires: 	R-htmltools
BuildRequires: 	R-digest
BuildRequires: 	R-colorspace
BuildRequires: 	R-knitr
BuildRequires: 	R-scales
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-rlang
BuildRequires: 	R-S7
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-gridExtra
BuildRequires: 	R-data.table
BuildRequires: 	R-viridis
BuildRequires: 	R-base64enc
BuildRequires: 	R-rmarkdown
BuildRequires: 	R-Formula
BuildRequires: 	R-stringr
BuildRequires: 	R-magrittr
BuildRequires: 	R-checkmate
BuildRequires: 	R-htmlwidgets
BuildRequires: 	R-rstudioapi
BuildRequires: 	R-fastmap
BuildRequires: 	R-evaluate
BuildRequires: 	R-highr
BuildRequires: 	R-xfun
BuildRequires: 	R-yaml
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-TH.data
BuildRequires: 	R-sandwich
BuildRequires: 	R-MatrixModels
BuildRequires: 	R-farver
BuildRequires: 	R-glue
BuildRequires: 	R-labeling
BuildRequires: 	R-R6
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-backports
BuildRequires: 	R-jsonlite
BuildRequires: 	R-bslib
BuildRequires: 	R-fontawesome
BuildRequires: 	R-jquerylib
BuildRequires: 	R-tinytex
BuildRequires: 	R-zoo
BuildRequires: 	R-stringi
BuildRequires: 	R-cachem
BuildRequires: 	R-memoise
BuildRequires: 	R-mime
BuildRequires: 	R-sass
BuildRequires: 	R-fs
BuildRequires: 	R-rappdirs
 
Suggests:	R-aod
Suggests:	R-knitr
Suggests:	R-rmarkdown
%description 
The predictive value of a statistical model can often be improved by 
applying shrinkage methods. This can be achieved, e.g., by regularized 
regression or empirical Bayes approaches. Various types of shrinkage 
factors can also be estimated after a maximum likelihood. While global 
shrinkage modifies all regression coefficients by the same factor, 
parameterwise shrinkage factors differ between regression coefficients. 
With variables which are either highly correlated or associated with 
regard to contents, such as several columns of a design matrix 
describing a nonlinear effect, parameterwise shrinkage factors are not 
interpretable and a compromise between global and parameterwise 
shrinkage, termed 'joint shrinkage', is a useful extension. A 
computational shortcut to resampling-based shrinkage factor estimation 
based on DFBETA residuals can be applied. Global, parameterwise and 
joint shrinkage for models fitted by lm(), glm(), coxph(), or mfp() is 
available. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.Rd
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog