File R-survdnn.spec of Package R-survdnn

# Automatically generated by CRAN2OBS
# 
# Spec file for package survdnn 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
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# remain the property of their copyright owners, unless otherwise agreed 
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# case the license is the MIT License). An "Open Source License" is a 
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# published by the Open Source Initiative. 
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# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  survdnn 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.6.3 
Release:        0 
Summary:        Deep Neural Networks for Survival Analysis Using 'torch' 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         survdnn_0.6.3.tar.gz 
Requires:       R-base 
Requires:	R-torch
Requires:	R-tibble
Requires:	R-dplyr
Requires:	R-purrr
Requires:	R-tidyr
Requires:	R-ggplot2
Requires:	R-rsample
Requires:	R-cli
Requires:	R-glue
Requires:	R-generics
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-R6
Requires:	R-rlang
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-scales
Requires:	R-withr
Requires:	R-furrr
Requires:	R-slider
Requires:	R-pkgconfig
Requires:	R-stringr
Requires:	R-cpp11
Requires:	R-Rcpp
Requires:	R-bit64
Requires:	R-coro
Requires:	R-callr
Requires:	R-desc
Requires:	R-safetensors
Requires:	R-jsonlite
Requires:	R-bit
Requires:	R-processx
Requires:	R-future
Requires:	R-globals
Requires:	R-utf8
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-warp
Requires:	R-stringi
Requires:	R-digest
Requires:	R-listenv
Requires:	R-parallelly
Requires:	R-ps
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-torch
BuildRequires: 	R-tibble
BuildRequires: 	R-dplyr
BuildRequires: 	R-purrr
BuildRequires: 	R-tidyr
BuildRequires: 	R-ggplot2
BuildRequires: 	R-rsample
BuildRequires: 	R-cli
BuildRequires: 	R-glue
BuildRequires: 	R-generics
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-rlang
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-withr
BuildRequires: 	R-furrr
BuildRequires: 	R-slider
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-stringr
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-bit64
BuildRequires: 	R-coro
BuildRequires: 	R-callr
BuildRequires: 	R-desc
BuildRequires: 	R-safetensors
BuildRequires: 	R-jsonlite
BuildRequires: 	R-bit
BuildRequires: 	R-processx
BuildRequires: 	R-future
BuildRequires: 	R-globals
BuildRequires: 	R-utf8
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-warp
BuildRequires: 	R-stringi
BuildRequires: 	R-digest
BuildRequires: 	R-listenv
BuildRequires: 	R-parallelly
BuildRequires: 	R-ps
 
Suggests:	R-testthat
Suggests:	R-knitr
Suggests:	R-rmarkdown
%description 
Provides deep learning models for right-censored survival data using 
the 'torch' backend. Supports multiple loss functions, including Cox 
partial likelihood, L2-penalized Cox, time-dependent Cox, and 
accelerated failure time (AFT) loss. Offers a formula-based interface, 
built-in support for cross-validation, hyperparameter tuning, survival 
curve plotting, and evaluation metrics such as the C-index, Brier 
score, and integrated Brier score. For methodological details, see 
Kvamme et al. (2019) <https://www.jmlr.org/papers/v20/18-424.html>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog