File R-topr.spec of Package R-topr

# Automatically generated by CRAN2OBS
# 
# Spec file for package topr 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  topr 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        2.0.2 
Release:        0 
Summary:        Create Custom Plots for Viewing Genetic Association Results 
Group:          Development/Libraries/Other 
License:        LGPL (>= 3) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         topr_2.0.2.tar.gz 
Requires:       R-base 
Requires:	R-ggplot2
Requires:	R-dplyr
Requires:	R-stringr
Requires:	R-scales
Requires:	R-ggrepel
Requires:	R-egg
Requires:	R-gridExtra
Requires:	R-magrittr
Requires:	R-tidyr
Requires:	R-enshuman
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-pillar
Requires:	R-R6
Requires:	R-rlang
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-withr
Requires:	R-Rcpp
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-stringi
Requires:	R-purrr
Requires:	R-cpp11
Requires:	R-utf8
Requires:	R-pkgconfig
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-ggplot2
BuildRequires: 	R-dplyr
BuildRequires: 	R-stringr
BuildRequires: 	R-scales
BuildRequires: 	R-ggrepel
BuildRequires: 	R-egg
BuildRequires: 	R-gridExtra
BuildRequires: 	R-magrittr
BuildRequires: 	R-tidyr
BuildRequires: 	R-enshuman
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-rlang
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-withr
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-stringi
BuildRequires: 	R-purrr
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-utf8
BuildRequires: 	R-pkgconfig
 
Suggests:	R-testthat
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-markdown
%description 
A collection of functions for visualizing,exploring and annotating 
genetic association results.Association results from multiple traits 
can be viewed simultaneously along with gene annotation, over the 
entire genome (Manhattan plot) or in the more detailed regional view. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog