File R-tramME.spec of Package R-tramME

# Automatically generated by CRAN2OBS
# 
# Spec file for package tramME 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  tramME 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0.8 
Release:        0 
Summary:        Transformation Models with Mixed Effects 
Group:          Development/Libraries/Other 
License:        GPL-2 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         tramME_1.0.8.tar.gz 
Requires:       R-base 
Requires:	R-tram
Requires:	R-mlt
Requires:	R-alabama
Requires:	R-TMB
Requires:	R-variables
Requires:	R-basefun
Requires:	R-numDeriv
Requires:	R-coneproj
Requires:	R-mvtnorm
Requires:	R-reformulas
Requires:	R-RcppEigen
Requires:	R-polynom
Requires:	R-orthopolynom
Requires:	R-Rcpp
Requires:	R-RcppArmadillo
Requires:	R-BB
Requires:	R-quadprog
Requires:	R-sandwich
Requires:	R-nloptr
Requires:	R-icenReg
Requires:	R-Rdpack
Requires:	R-Formula
Requires:	R-multcomp
Requires:	R-coda
Requires:	R-foreach
Requires:	R-MLEcens
Requires:	R-TH.data
Requires:	R-rbibutils
Requires:	R-zoo
Requires:	R-iterators
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-tram
BuildRequires: 	R-mlt
BuildRequires: 	R-alabama
BuildRequires: 	R-TMB-devel
BuildRequires: 	R-variables
BuildRequires: 	R-basefun
BuildRequires: 	R-numDeriv
BuildRequires: 	R-coneproj
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-reformulas
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-polynom
BuildRequires: 	R-orthopolynom
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-BB
BuildRequires: 	R-quadprog
BuildRequires: 	R-sandwich
BuildRequires: 	R-nloptr
BuildRequires: 	R-icenReg
BuildRequires: 	R-Rdpack
BuildRequires: 	R-Formula
BuildRequires: 	R-multcomp
BuildRequires: 	R-coda
BuildRequires: 	R-foreach
BuildRequires: 	R-MLEcens
BuildRequires: 	R-TH.data
BuildRequires: 	R-rbibutils
BuildRequires: 	R-zoo
BuildRequires: 	R-iterators
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-lme4
Suggests:	R-multcomp
Suggests:	R-knitr
Suggests:	R-coxme
Suggests:	R-ordinal
Suggests:	R-ordinalCont
Suggests:	R-gamm4
Suggests:	R-gamlss.dist
Suggests:	R-glmmTMB
Suggests:	R-xtable
%description 
Likelihood-based estimation of mixed-effects transformation models 
using the Template Model Builder ('TMB', Kristensen et al., 2016) 
<doi:10.18637/jss.v070.i05>. The technical details of transformation 
models are given in Hothorn et al. (2018) <doi:10.1111/sjos.12291>. 
Likelihood contributions of exact, randomly censored (left, right, 
interval) and truncated observations are supported. The random effects 
are assumed to be normally distributed on the scale of the 
transformation function, the marginal likelihood is evaluated using the 
Laplace approximation, and the gradients are calculated with automatic 
differentiation (Tamasi & Hothorn, 2021) <doi:10.32614/RJ-2021-075>. 
Penalized smooth shift terms can be defined using the 'mgcv' notation. 
Additive mixed-effects transformation models are described in Tamasi 
(2025) <doi:10.18637/jss.v114.i11>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/demo-data
%{rlibdir}/%{packname}/demo
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
 
%changelog