File R-ubms.spec of Package R-ubms

# Automatically generated by CRAN2OBS
# 
# Spec file for package ubms 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
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# remain the property of their copyright owners, unless otherwise agreed 
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# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  ubms 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.2.7 
Release:        0 
Summary:        Bayesian Models for Data from Unmarked Animals using 'Stan' 
Group:          Development/Libraries/Other 
License:        GPL (>= 3) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         ubms_1.2.7.tar.gz 
Requires:       R-base 
Requires:	R-unmarked
Requires:	R-ggplot2
Requires:	R-gridExtra
Requires:	R-loo
Requires:	R-pbapply
Requires:	R-Rcpp
Requires:	R-reformulas
Requires:	R-rlang
Requires:	R-RSpectra
Requires:	R-rstan
Requires:	R-rstantools
Requires:	R-BH
Requires:	R-RcppArmadillo
Requires:	R-RcppEigen
Requires:	R-StanHeaders
Requires:	R-RcppParallel
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-S7
Requires:	R-scales
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-checkmate
Requires:	R-matrixStats
Requires:	R-posterior
Requires:	R-Rdpack
Requires:	R-inline
Requires:	R-pkgbuild
Requires:	R-QuickJSR
Requires:	R-desc
Requires:	R-TMB
Requires:	R-backports
Requires:	R-R6
Requires:	R-glue
Requires:	R-callr
Requires:	R-processx
Requires:	R-abind
Requires:	R-tibble
Requires:	R-tensorA
Requires:	R-pillar
Requires:	R-distributional
Requires:	R-rbibutils
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-generics
Requires:	R-numDeriv
Requires:	R-utf8
Requires:	R-ps
Requires:	R-magrittr
Requires:	R-pkgconfig
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-unmarked
BuildRequires: 	R-ggplot2
BuildRequires: 	R-gridExtra
BuildRequires: 	R-loo
BuildRequires: 	R-pbapply
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-reformulas
BuildRequires: 	R-rlang
BuildRequires: 	R-RSpectra-devel
BuildRequires: 	R-rstan-devel
BuildRequires: 	R-rstantools
BuildRequires: 	R-BH-devel
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-StanHeaders-devel
BuildRequires: 	R-RcppParallel-devel
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-checkmate
BuildRequires: 	R-matrixStats
BuildRequires: 	R-posterior
BuildRequires: 	R-Rdpack
BuildRequires: 	R-inline
BuildRequires: 	R-pkgbuild
BuildRequires: 	R-QuickJSR-devel
BuildRequires: 	R-desc
BuildRequires: 	R-TMB-devel
BuildRequires: 	R-backports
BuildRequires: 	R-R6
BuildRequires: 	R-glue
BuildRequires: 	R-callr
BuildRequires: 	R-processx
BuildRequires: 	R-abind
BuildRequires: 	R-tibble
BuildRequires: 	R-tensorA
BuildRequires: 	R-pillar
BuildRequires: 	R-distributional
BuildRequires: 	R-rbibutils
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-generics
BuildRequires: 	R-numDeriv
BuildRequires: 	R-utf8
BuildRequires: 	R-ps
BuildRequires: 	R-magrittr
BuildRequires: 	R-pkgconfig
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-knitr
Suggests:	R-raster
Suggests:	R-rmarkdown
Suggests:	R-terra
Suggests:	R-testthat
%description 
Fit Bayesian hierarchical models of animal abundance and occurrence via 
the 'rstan' package, the R interface to the 'Stan' C++ library. 
Supported models include single-season occupancy, dynamic occupancy, 
and N-mixture abundance models. Covariates on model parameters are 
specified using a formula-based interface similar to package 
'unmarked', while also allowing for estimation of random slope and 
intercept terms. References: Carpenter et al. (2017) 
<doi:10.18637/jss.v076.i01>; Fiske and Chandler (2011) 
<doi:10.18637/jss.v043.i10>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/include
%{rlibdir}/%{packname}/libs
%{rlibdir}/%{packname}/stan
 
%changelog