File R-wqspt.spec of Package R-wqspt
# Automatically generated by CRAN2OBS
#
# Spec file for package wqspt
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
#
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
#
# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
%global packname wqspt
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 1.0.2
Release: 0
Summary: Permutation Test for Weighted Quantile Sum Regression
Group: Development/Libraries/Other
License: GPL-3
URL: http://cran.r-project.org/web/packages/%{packname}
Source: wqspt_1.0.2.tar.gz
Requires: R-base
Requires: R-rlang
Requires: R-gWQS
Requires: R-pbapply
Requires: R-ggplot2
Requires: R-mvtnorm
Requires: R-viridis
Requires: R-extraDistr
Requires: R-cowplot
Requires: R-car
Requires: R-future
Requires: R-future.apply
Requires: R-pscl
Requires: R-reshape2
Requires: R-carData
Requires: R-abind
Requires: R-Formula
Requires: R-pbkrtest
Requires: R-quantreg
Requires: R-lme4
Requires: R-scales
Requires: R-gtable
Requires: R-Rcpp
Requires: R-digest
Requires: R-globals
Requires: R-listenv
Requires: R-parallelly
Requires: R-cli
Requires: R-glue
Requires: R-isoband
Requires: R-lifecycle
Requires: R-tibble
Requires: R-vctrs
Requires: R-withr
Requires: R-broom
Requires: R-rlist
Requires: R-plotROC
Requires: R-knitr
Requires: R-kableExtra
Requires: R-ggrepel
Requires: R-bookdown
Requires: R-plyr
Requires: R-stringr
Requires: R-viridisLite
Requires: R-gridExtra
Requires: R-htmltools
Requires: R-rmarkdown
Requires: R-jquerylib
Requires: R-xfun
Requires: R-tinytex
Requires: R-yaml
Requires: R-backports
Requires: R-dplyr
Requires: R-generics
Requires: R-purrr
Requires: R-tidyr
Requires: R-magrittr
Requires: R-xml2
Requires: R-rstudioapi
Requires: R-svglite
Requires: R-evaluate
Requires: R-highr
Requires: R-minqa
Requires: R-nloptr
Requires: R-reformulas
Requires: R-RcppEigen
Requires: R-numDeriv
Requires: R-doBy
Requires: R-gridSVG
Requires: R-shiny
Requires: R-SparseM
Requires: R-MatrixModels
Requires: R-jsonlite
Requires: R-XML
Requires: R-data.table
Requires: R-farver
Requires: R-labeling
Requires: R-R6
Requires: R-RColorBrewer
Requires: R-stringi
Requires: R-pillar
Requires: R-pkgconfig
Requires: R-Deriv
Requires: R-modelr
Requires: R-microbenchmark
Requires: R-tidyselect
Requires: R-base64enc
Requires: R-fastmap
Requires: R-utf8
Requires: R-Rdpack
Requires: R-bslib
Requires: R-fontawesome
Requires: R-httpuv
Requires: R-mime
Requires: R-xtable
Requires: R-sourcetools
Requires: R-later
Requires: R-promises
Requires: R-crayon
Requires: R-commonmark
Requires: R-cachem
Requires: R-systemfonts
Requires: R-textshaping
Requires: R-cpp11
Requires: R-memoise
Requires: R-sass
Requires: R-rbibutils
Requires: R-fs
Requires: R-rappdirs
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-rlang
BuildRequires: R-gWQS
BuildRequires: R-pbapply
BuildRequires: R-ggplot2
BuildRequires: R-mvtnorm
BuildRequires: R-viridis
BuildRequires: R-extraDistr
BuildRequires: R-cowplot
BuildRequires: R-car
BuildRequires: R-future
BuildRequires: R-future.apply
BuildRequires: R-pscl
BuildRequires: R-reshape2
BuildRequires: R-carData
BuildRequires: R-abind
BuildRequires: R-Formula
BuildRequires: R-pbkrtest
BuildRequires: R-quantreg
BuildRequires: R-lme4
BuildRequires: R-scales
BuildRequires: R-gtable
BuildRequires: R-Rcpp-devel
BuildRequires: R-digest
BuildRequires: R-globals
BuildRequires: R-listenv
BuildRequires: R-parallelly
BuildRequires: R-cli
BuildRequires: R-glue
BuildRequires: R-isoband
BuildRequires: R-lifecycle
BuildRequires: R-tibble
BuildRequires: R-vctrs
BuildRequires: R-withr
BuildRequires: R-broom
BuildRequires: R-rlist
BuildRequires: R-plotROC
BuildRequires: R-knitr
BuildRequires: R-kableExtra
BuildRequires: R-ggrepel
BuildRequires: R-bookdown
BuildRequires: R-plyr
BuildRequires: R-stringr
BuildRequires: R-viridisLite
BuildRequires: R-gridExtra
BuildRequires: R-htmltools
BuildRequires: R-rmarkdown
BuildRequires: R-jquerylib
BuildRequires: R-xfun
BuildRequires: R-tinytex
BuildRequires: R-yaml
BuildRequires: R-backports
BuildRequires: R-dplyr
BuildRequires: R-generics
BuildRequires: R-purrr
BuildRequires: R-tidyr
BuildRequires: R-magrittr
BuildRequires: R-xml2
BuildRequires: R-rstudioapi
BuildRequires: R-svglite
BuildRequires: R-evaluate
BuildRequires: R-highr
BuildRequires: R-minqa
BuildRequires: R-nloptr
BuildRequires: R-reformulas
BuildRequires: R-RcppEigen-devel
BuildRequires: R-numDeriv
BuildRequires: R-doBy
BuildRequires: R-gridSVG
BuildRequires: R-shiny
BuildRequires: R-SparseM
BuildRequires: R-MatrixModels
BuildRequires: R-jsonlite
BuildRequires: R-XML
BuildRequires: R-data.table
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-R6
BuildRequires: R-RColorBrewer
BuildRequires: R-stringi
BuildRequires: R-pillar
BuildRequires: R-pkgconfig
BuildRequires: R-Deriv
BuildRequires: R-modelr
BuildRequires: R-microbenchmark
BuildRequires: R-tidyselect
BuildRequires: R-base64enc
BuildRequires: R-fastmap
BuildRequires: R-utf8
BuildRequires: R-Rdpack
BuildRequires: R-bslib
BuildRequires: R-fontawesome
BuildRequires: R-httpuv
BuildRequires: R-mime
BuildRequires: R-xtable
BuildRequires: R-sourcetools-devel
BuildRequires: R-later
BuildRequires: R-promises
BuildRequires: R-crayon
BuildRequires: R-commonmark
BuildRequires: R-cachem
BuildRequires: R-systemfonts
BuildRequires: R-textshaping
BuildRequires: R-cpp11-devel
BuildRequires: R-memoise
BuildRequires: R-sass
BuildRequires: R-rbibutils
BuildRequires: R-fs
BuildRequires: R-rappdirs
Suggests: R-rmarkdown
Suggests: R-knitr
Suggests: R-testthat
%description
Implements a permutation test method for the weighted quantile sum
(WQS) regression, building off the 'gWQS' package (Renzetti et al.
<https://CRAN.R-project.org/package=gWQS>). Weighted quantile sum
regression is a statistical technique to evaluate the effect of complex
exposure mixtures on an outcome (Carrico et al. 2015
<doi:10.1007/s13253-014-0180-3>). The model features a statistical
power and Type I error (i.e., false positive) rate trade-off, as there
is a machine learning step to determine the weights that optimize the
linear model fit. This package provides an alternative method based on
a permutation test that should reliably allow for both high power and
low false positive rate when utilizing WQS regression (Day et al. 2022
<doi:10.1289/EHP10570>).
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/WORDLIST
%doc %{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%changelog
