File perl-MRS-Client.spec of Package perl-MRS-Client

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File perl-MRS-Client.spec of Package perl-MRS-Client

#
# spec file for package perl-MRS-Client
#
# Copyright (c) 2015 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via http://bugs.opensuse.org/
#

Name:           perl-MRS-Client
Version:        1.0.1
Release:        0
%define cpan_name MRS-Client
Summary:        SOAP-based client of the MRS Retrieval server
License:        Artistic-1.0 or GPL-1.0+
Group:          Development/Libraries/Perl
Url:            http://search.cpan.org/dist/MRS-Client/
Source0:        http://www.cpan.org/authors/id/T/TU/TULSOFT/%{cpan_name}-%{version}.tar.gz
BuildArch:      noarch
BuildRoot:      %{_tmppath}/%{name}-%{version}-build
BuildRequires:  perl
BuildRequires:  perl-macros
BuildRequires:  perl(XML::Compile::SOAP11) >= 2.26
BuildRequires:  perl(XML::Compile::Transport::SOAPHTTP)
BuildRequires:  perl(XML::Compile::WSDL11)
Requires:       perl(XML::Compile::SOAP11) >= 2.26
Requires:       perl(XML::Compile::Transport::SOAPHTTP)
Requires:       perl(XML::Compile::WSDL11)
%{perl_requires}

%description
This module is a SOAP-based (Web Services) client that can talk, and get
data from an *MRS server*, a search engine for biological and medical
databanks that searches well over a terabyte of indexed text. See details
about MRS and its author Maarten Hekkelman in the /"ACKNOWLEDGMENTS"
manpage.

Because this module is only a client, you need an MRS server running. You
can install your own (see details in the MRS distribution), or you need to
know a site that runs it. By default, this module contacts the MRS server
at CMBI (_http://mrs.cmbi.ru.nl/m6/_).

The usual scenario is the following:

* *

Create a new instance of a client by calling:

my $client = MRS::Client->new (%args);

* *

Optionally, find out what databanks are available by calling:

my @ids = map { $_->id } $client->db;
      print "Names:\n" . join ("\n", @ids) . "\n";

* *

Make one or more queries on a selected databanks and iterate over the
  result:

my $query = $client->db ('enzyme')->find (['cone', 'snail']);
      while (my $record = $query->next) {
         print $record . "\n";
      }

Or, make the same query on all available databanks:

my $query = $client->find (['cone', 'snail']);
      while (my $record = $query->next) {
         print $record . "\n";
      }

The format of returned records is specified by a parameter of the _find_
  method (see more in the "METHODS" manpage).

* *

Additionally, this module provides access to _blastp_ program, using MRS
  indexed databases. And it can invoke multiple alignment program
  _clustalw_.

%prep
%setup -q -n %{cpan_name}-%{version}

%build
%{__perl} Makefile.PL INSTALLDIRS=vendor
%{__make} %{?_smp_mflags}

%check
%{__make} test

%install
%perl_make_install
%perl_process_packlist
%perl_gen_filelist

%files -f %{name}.files
%defattr(-,root,root,755)
%doc ChangeLog docs LICENSE README README.md

%changelog

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