File python-scipy.spec of Package python-scipy.29836

#
# spec file for package python-scipy
#
# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via https://bugs.opensuse.org/
#


%global flavor @BUILD_FLAVOR@%{nil}

%define skip_python2 1
%define _ver 1_3_3
%define shortname scipy
%define pname python-%{shortname}

%bcond_with ringdisabled

%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')

%if "%flavor" == ""
ExclusiveArch:  do_not_build
%endif

%{?!python_module:%define python_module() python-%{**} python3-%{**}}

%if "%flavor" == "standard"
 %bcond_with hpc
 %ifarch armv6l s390 s390x m68k riscv64
  %bcond_with openblas
 %else
    %if 0%{?sle_version} == 120200
      %ifarch i586
        %bcond_with openblas
      %else
        %bcond_without openblas
      %endif
    %else
      %bcond_without openblas
    %endif
  %endif
%endif

%if "%flavor" == "gnu-hpc"
 %bcond_without hpc
 %define compiler_family gnu
 %undefine c_f_ver
%endif

%if "%flavor" == "gnu7-hpc"
 %bcond_without hpc
 %define compiler_family gnu
 %define c_f_ver 7
%endif

%if %{without hpc}
%define package_name %{pname}
%define p_python_sitearch %python_sitearch
%define p_prefix %_prefix
%define p_bindir %_bindir
%else
# Magic for OBS Staging. Only build the flavors required by
# other packages in the ring.
%if %{with ringdisabled}
ExclusiveArch:  do_not_build
%endif
 %ifarch armv6l s390 s390x m68k riscv64 i586
ExclusiveArch:  do_not_build   
 %endif
%{!?compiler_family:%global compiler_family gnu}
%{hpc_init -c %compiler_family %{?c_f_ver:-v %{c_f_ver}} %{?ext:-e %{ext}}}
%{hpc_modules_init openblas}
%define package_name %{hpc_package_name %_ver}
%define p_python_sitearch %hpc_python_sitearch
%define p_prefix %hpc_prefix
%define p_bindir %hpc_bindir
%endif

Name:           %{package_name}
Version:        1.3.3
Release:        0
Summary:        Scientific Tools for Python
License:        BSD-3-Clause AND LGPL-2.0-or-later
Group:          Development/Libraries/Python
Url:            http://www.scipy.org
Source0:        https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
Source100:      python-scipy-rpmlintrc
# PATCH-FIX-OPENSUSE - no_implicit_decl.patch - Fix implicit-pointer-decl warnings and implicit-fortify-decl error
Patch0:         no_implicit_decl.patch
# PATCH-FIX-UPSTREAM CVE-2023-25399 bsc#1213062 gh#scipy/scipy#16397
# Fix incorrect refcounting
Patch1:         CVE-2023-25399-incorrect-refcounting.patch
# PATCH-FIX-UPSTREAM CVE-2023-29824 bsc#1213137 gh#scipy/scipy#15013
Patch2:         CVE-2023-29824-use-after-free.patch
BuildRequires:  %{python_module Cython >= 0.19}
BuildRequires:  %{python_module devel}
BuildRequires:  %{python_module setuptools}
BuildRequires:  fdupes
BuildRequires:  python-rpm-macros
BuildRequires:  swig
%if %{without hpc}
BuildRequires:  gcc-c++
BuildRequires:  gcc-fortran
 %if %{with openblas}
BuildRequires:  openblas-devel
 %else
BuildRequires:  blas-devel
BuildRequires:  lapack-devel
 %endif
BuildRequires:  %{python_module numpy-devel >= 1.5.1}
BuildRequires:  lapacke-devel
Requires:       python-numpy >= 1.5.1
%else
BuildRequires:  %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel >= 1.3
BuildRequires:  libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
BuildRequires:  %{python_module numpy%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel}
BuildRequires:  lua-lmod
BuildRequires:  suse-hpc >= 0.3
Requires:       libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc
Requires:       python-numpy%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc >= 1.5.1
%endif
%{?with_hpc:%{hpc_requires}}
%python_subpackages

%description
Scipy is open-source software for mathematics, science, and
engineering. The core library is NumPy which provides convenient and
fast N-dimensional array manipulation. The SciPy library is built to
work with NumPy arrays, and provides many user-friendly and efficient
numerical routines such as routines for numerical integration and
optimization. Together, they run on all popular operating systems, are
quick to install, and are free of charge. NumPy and SciPy are easy to
use, but powerful enough to be depended upon by some of the world\'s
leading scientists and engineers.

%{?with_hpc:%{hpc_python_master_package -L -a }}

%prep
%setup -q -n scipy-%{version}
%autopatch -p1
find . -type f -name "*.py" -exec sed -i "s|#!%{_bindir}/env python||" {} \;

find . -name sobol_vec\* -executable -print -exec chmod -x '{}' \;

%build
%{python_expand #
%if %{with hpc}
py_ver=%{$python_version}
%hpc_setup
module load python${py_ver/.*/}-numpy
export CFLAGS="$(pkg-config --cflags openblas) %{optflags} -fno-strict-aliasing" LIBS="$(pkg-config --libs openblas)"
export OPENBLAS=$OPENBLAS_LIB
cat > site.cfg <<EOF
[openblas]
libraries = openblas
library_dirs = $OPENBLAS_LIB
include_dirs = $OPENBLAS_INC
EOF
%else
export CFLAGS="%{optflags} -fno-strict-aliasing"
export BLAS=%{_libdir}
export LAPACK=%{_libdir}
 %if %{with openblas}
export OPENBLAS=%{_libdir}
 %endif

# Remove .pyc files so that they are regenerated again
find . -name \*.pyc -print -delete

%endif
%__$python setup.py config_fc --fcompiler=gnu95 --noarch build
}

%install
%{python_expand #
%if %{with hpc}
py_ver=%{$python_version}
%hpc_setup
module load python${py_ver/.*/}-numpy
%endif
%__$python setup.py install --prefix=%{p_prefix} --root=%{buildroot}
%fdupes %{buildroot}%{$python_sitearch}

%if %{with hpc}
%define hpc_module_pname python${py_ver/.*/}-%{shortname}
py_ver=%{$python_version}
sitesearch_path=`$python -c "import sysconfig as s; print(s.get_paths(vars={'platbase':'%{hpc_prefix}','base':'%{hpc_prefix}'}).get('platlib'))"`
rm -rf %{buildroot}${sitesearch_path}/scipy/{,core,distutils,f2py,fft,lib,linalg,ma,matrixlib,oldnumeric,polynomial,random,testing}/tests
%hpc_write_modules_files
#%%Module1.0#####################################################################

proc ModulesHelp { } {

puts stderr " "
puts stderr "This module loads the %{pname} library built with the %{compiler_family} compiler "
puts stderr "toolchain."
puts stderr "\nVersion %{version}\n"

}
module-whatis "Name: %{pname} built with %{compiler_family} toolchain."
module-whatis "Version: %{version}"
module-whatis "Category: python module"
module-whatis "Description: %{SUMMARY}"
module-whatis "URL %{url}"

set     version             %{version}

depends-on python${py_ver/.*/}-numpy

prepend-path    PYTHONPATH          ${sitesearch_path}

setenv          %{hpc_upcase_trans_hyph %pname}_DIR        %{hpc_prefix}
setenv          %{hpc_upcase_trans_hyph %pname}_BIN        %{hpc_bindir}

family %{shortname}
EOF
%endif
}

%if %{with hpc}
%post
%hpc_module_delete_if_default
%endif

%files %{python_files}
%license LICENSE.txt
%{p_python_sitearch}/scipy/
%{p_python_sitearch}/scipy-*-py*.egg-info

%if %{with hpc}
%define hpc_module_pname python%(a=%{hpc_python_version}; echo -n ${a/.*/})-scipy
%{hpc_modules_files}
%{hpc_dirs}
%dir %{hpc_libdir}/python%{hpc_python_version}
%dir %{p_python_sitearch}
%endif

%changelog