File debian.changelog of Package VarGibbs

Overview Repositories Revisions Requests Users Attributes Meta

File debian.changelog of Package VarGibbs

vargibbs (4.1) stable; urgency=low
 
  * New parameters for DNA mismatches.

-- Gerald Weber <gweberbh@gmail.com>  Thu, 26 Oct 2023 12:00:00 -0300

vargibbs (4.0) stable; urgency=low
 
  * New parameters for LNA.

-- Gerald Weber <gweberbh@gmail.com>  Tue, 09 May 2023 21:02:16 -0300

vargibbs (3.1) stable; urgency=low
 
  * New script files for RNA.

-- Gerald Weber <gweberbh@gmail.com>  Mon, 16 Aug 2021 12:00:00 -0300

vargibbs (3.0) stable; urgency=low
 
  * Extended data format.

-- Gerald Weber <gweberbh@gmail.com>  Mon, 01 Feb 2021 12:00:00 -0300

vargibbs (2.2) stable; urgency=low
 
  * New parameter files for hybrid DNA-RNA. 
  
  * New option to require log files to be written in gzip format (new option -zlog).
  
  * Redesign of NN calculation taking advantage of pointers, CPU times reduce by a factor of 7 compared to previous versions.
  
  * Added symmetry_correction_entropy to some parameter files.
  
  * New parameter file P-SL04.par.
  
  * boost_iostreams library is now required for compilation.

-- Gerald Weber <gweberbh@gmail.com>  Fri, 22 Mar 2019 12:00:00 -0300

vargibbs (2.1) stable; urgency=low

* New parameters for RNA with salt dependence.
  
  * New option for performing numerous salt corrections.

-- Gerald Weber <gweberbh@gmail.com>  Tue, 05 Oct 2018 12:00:00 -0300

vargibbs (2.0) stable; urgency=low

* Modifications for hybrid DNA-RNA sequences with specific naming scheme for parameters. 
  
  * Documentation updates and corrections. 
  
  * Corrected parameter files P-BS86.par and P-FR86.par for RNA.

* Several new parameters from the literature. Added new option nnpo for using NN parameters only.

-- Gerald Weber <gweberbh@gmail.com>  Fri, 25 Aug 2017 12:00:00 -0300

vargibbs (1.1) stable; urgency=low

* Documentation updates.
  
  * Code clean up, removed gbc_exp from C++ name space.
  
  * Linking to the library libboost_regex is now required.
  
  * Added optimized parameter files at different salt concentrations for D-OW04 datasets.
   
  * Added new parameters from the literature.
  
  * Correcting bug which was not generating complementary sequence when cseq was not given.
  
  * You can now specify a list of Ct concentrations in option -ct.

-- Gerald Weber <gweberbh@gmail.com>  Fri, 11 Dec 2015 12:00:00 -0300

vargibbs (1.0) stable; urgency=low

* Initial Release

-- Gerald Weber <gweberbh@gmail.com>  Fri, 25 Jul 2014 14:20:46 -0300

Places

File debian.changelog of Package VarGibbs

Places