File obs_log_None_standard_riscv64.txt of Package failed_python-biopython
[ 0s] Using BUILD_ROOT=/var/cache/obs/worker/root_26/.mount
[ 0s] Using BUILD_ARCH=riscv64
[ 0s] Doing kvm build in /var/cache/obs/worker/root_26/root
[ 0s]
[ 0s]
[ 0s] i02-ch2b started "build python-biopython.spec" at Sun Aug 10 23:34:21 UTC 2025.
[ 0s]
[ 0s] Building failed_python-biopython for project 'home:lalala123:RISCV' repository 'standard' arch 'riscv64' srcmd5 '1e7837d0ed5576a9b028513eb152e979'
[ 0s]
[ 0s] processing recipe /var/cache/obs/worker/root_26/.build-srcdir/python-biopython.spec ...
[ 0s] running changelog2spec --target rpm --file /var/cache/obs/worker/root_26/.build-srcdir/python-biopython.spec
[ 0s] init_buildsystem --configdir /var/run/obs/worker/26/build/configs --cachedir /var/cache/build --prepare --clean --rpmlist /var/cache/obs/worker/root_26/.build.rpmlist /var/cache/obs/worker/root_26/.build-srcdir/python-biopython.spec build ...
[ 1s] cycle: rpm-config-SUSE -> rpm
[ 1s] breaking dependency rpm-config-SUSE -> rpm
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[ 1s] [2/29] preinstalling system-user-root...
[ 1s] [3/29] preinstalling terminfo-base...
[ 1s] [4/29] preinstalling filesystem...
[ 1s] [5/29] preinstalling glibc...
[ 1s] [6/29] preinstalling fillup...
[ 1s] [7/29] preinstalling libacl1...
[ 1s] [8/29] preinstalling libattr1...
[ 1s] [9/29] preinstalling libbz2-1...
[ 1s] [10/29] preinstalling libcap2...
[ 1s] [11/29] preinstalling libgmp10...
[ 1s] [12/29] preinstalling libgpg-error0...
[ 1s] [13/29] preinstalling libjitterentropy3...
[ 1s] [14/29] preinstalling liblua5_4-5...
[ 1s] [15/29] preinstalling liblzma5...
[ 1s] [16/29] preinstalling libpcre2-8-0...
[ 1s] [17/29] preinstalling libpopt0...
[ 1s] [18/29] preinstalling libz1...
[ 1s] [19/29] preinstalling libzstd1...
[ 1s] [20/29] preinstalling libncurses6...
[ 1s] [21/29] preinstalling libreadline8...
[ 1s] [22/29] preinstalling libselinux1...
[ 1s] [23/29] preinstalling libgcrypt20...
[ 1s] [24/29] preinstalling bash...
[ 1s] [25/29] preinstalling bash-sh...
[ 1s] [26/29] preinstalling qemu-linux-user...
[ 2s] [27/29] preinstalling coreutils...
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[ 2s] [1/18] preinstalling grep...
[ 2s] [2/18] preinstalling kernel-obs-build...
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[ 2s] [5/18] preinstalling libcrypt1...
[ 2s] [6/18] preinstalling libeconf0...
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[ 2s] [8/18] preinstalling libsmartcols1...
[ 2s] [9/18] preinstalling libuuid1...
[ 2s] [10/18] preinstalling libblkid1...
[ 2s] [11/18] preinstalling perl-base...
[ 2s] [12/18] preinstalling permctl...
[ 2s] [13/18] preinstalling libmount1...
[ 2s] [14/18] preinstalling permissions-config...
[ 2s] [15/18] preinstalling libfdisk1...
[ 2s] [16/18] preinstalling permissions...
[ 2s] [17/18] preinstalling pam...
[ 2s] [18/18] preinstalling util-linux...
[ 2s] copying packages...
[ 3s] reordering...cycle: lua54 -> lua-interpreter
[ 3s] breaking dependency lua54 -> lua-interpreter
[ 3s] cycle: binutils -> libctf0
[ 3s] breaking dependency libctf0 -> binutils
[ 3s] cycle: python313-base -> libpython3_13-1_0
[ 3s] breaking dependency python313-base -> libpython3_13-1_0
[ 3s] cycle: libpython3_11-1_0 -> python311-base
[ 3s] breaking dependency python311-base -> libpython3_11-1_0
[ 3s] cycle: libpython3_12-1_0 -> python312-base
[ 3s] breaking dependency python312-base -> libpython3_12-1_0
[ 3s] cycle: rpm-config-SUSE -> rpm
[ 3s] breaking dependency rpm-config-SUSE -> rpm
[ 3s] done
[ 3s] Detected virtio-serial support
[ 4s] booting kvm...
[ 4s] ### VM INTERACTION START ###
[ 4s] Using virtio-serial support and enabling console input
[ 4s] /usr/bin/qemu-kvm -nodefaults -no-reboot -nographic -vga none -cpu host -M pc,accel=kvm,usb=off,dump-guest-core=off,vmport=off -sandbox on -bios /usr/share/qemu/qboot.rom -object rng-random,filename=/dev/random,id=rng0 -device virtio-rng-pci,rng=rng0 -object iothread,id=io0 -run-with user=qemu -net none -kernel /var/cache/obs/worker/root_26/.mount/boot/kernel -initrd /var/cache/obs/worker/root_26/.mount/boot/initrd -append root=/dev/disk/by-id/virtio-0 rootfstype=ext4 rootflags=noatime elevator=noop nmi_watchdog=0 rw ia32_emulation=1 oops=panic panic=1 quiet console=hvc0 init=/.build/initvm.x86_64 -m 16384 -drive file=/var/cache/obs/worker/root_26/root,format=raw,if=none,id=disk,cache=unsafe,aio=io_uring -device virtio-blk-pci,iothread=io0,drive=disk,serial=0 -drive file=/var/cache/obs/worker/root_26/swap,format=raw,if=none,id=swap,cache=unsafe,aio=io_uring -device virtio-blk-pci,iothread=io0,drive=swap,serial=1 -device virtio-serial,max_ports=2 -device virtconsole,chardev=virtiocon0 -chardev stdio,mux=on,id=virtiocon0 -mon chardev=virtiocon0 -chardev socket,id=monitor,server=on,wait=off,path=/var/cache/obs/worker/root_26/root.qemu/monitor -mon chardev=monitor,mode=readline -smp 4
[ 5s] [!p]104[?7h[ 0.591519][ T1] systemd[1]: Failed to start Virtual Console Setup.
[ 5s] [[0;1;31mFAILED[0m] Failed to start [0;1;39mVirtual Console Setup[0m.
[ 7s] [6n[32766;32766H[6n[!p]104[?7h### VM INTERACTION END ###
[ 7s] ^[[24;10R2nd stage started in virtual machine
[ 7s] ^[[24;80Rmachine type: riscv64
[ 7s] Linux version: 6.15.8-1-default #1 SMP PREEMPT_DYNAMIC Thu Jul 24 07:19:58 UTC 2025 (e03d052)
[ 7s] Time: Sun Aug 10 23:34:28 UTC 2025
[ 7s] Increasing log level from now on...
[ 7s] [ 2.891634][ T574] sysrq: Changing Loglevel
[ 7s] [ 2.891725][ T574] sysrq: Loglevel set to 4
[ 7s] Enable sysrq operations
[ 7s] Setting up swapspace version 1, size = 4 GiB (4294963200 bytes)
[ 7s] no label, UUID=e359d9d4-a45c-4347-852c-00bd5d508df1
[ 7s] WARNING: udev not running, creating extra device nodes
[ 8s] logging output to //.build.log...
[ 8s] processing recipe //.build-srcdir/python-biopython.spec ...
[ 8s] init_buildsystem --configdir /.build/configs --cachedir /var/cache/build //.build-srcdir/python-biopython.spec build ...
[ 8s] initializing rpm db...
[ 8s] querying package ids...
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[ 16s] now installing cumulated packages
[ 17s] Preparing... ########################################
[ 17s] Updating / installing...
[ 17s] system-user-root-20190513-2.4 ########################################
[ 17s] terminfo-base-6.5.20250726-79.1 ########################################
[ 17s] python-rpm-macros-20241120.6ae645f-1.2########################################
[ 17s] pkgconf-m4-2.2.0-1.1 ########################################
[ 17s] file-magic-5.46-4.1 ########################################
[ 17s] crypto-policies-20250124.4d262e7-1.1 ########################################
[ 17s] compat-usrmerge-tools-84.87-5.5 ########################################
[ 18s] filesystem-84.87-18.1 ########################################
[ 18s] glibc-2.41-3.1 ########################################
[ 18s] libz1-1.3.1-1.1 ########################################
[ 18s] libgcc_s1-15.1.1+git10189-1.1 ########################################
[ 18s] libstdc++6-15.1.1+git10189-1.1 ########################################
[ 18s] libbz2-1-1.0.8-5.3 ########################################
[ 18s] liblzma5-5.8.1-1.1 ########################################
[ 18s] libzstd1-1.5.7-3.1 ########################################
[ 18s] libelf1-0.192-2.1 ########################################
[ 18s] libcrypt1-4.4.38-1.1 ########################################
[ 19s] libgmp10-6.3.0-5.1 ########################################
[ 19s] update-alternatives-1.22.21-1.1 ########################################
[ 19s] perl-base-5.42.0-1.1 ########################################
[ 19s] libacl1-2.3.2-2.1 ########################################
[ 19s] libuuid1-2.41.1-2.1 ########################################
[ 19s] libmpfr6-4.2.2-1.1 ########################################
[ 19s] libdw1-0.192-2.1 ########################################
[ 19s] fillup-1.42-281.1 ########################################
[ 19s] libcap2-2.75-1.1 ########################################
[ 19s] libeconf0-0.7.10-1.1 ########################################
[ 19s] libblkid1-2.41.1-2.1 ########################################
[ 20s] libexpat1-2.6.1-1.1 ########################################
[ 20s] libffi8-3.4.7-1.1 ########################################
[ 20s] libgomp1-15.1.1+git10189-1.1 ########################################
[ 20s] liblua5_4-5-5.4.8-3.1 ########################################
[ 20s] libmpdec4-4.0.1-2.1 ########################################
[ 20s] libpopt0-1.19-1.4 ########################################
[ 20s] libncurses6-6.5.20250726-79.1 ########################################
[ 20s] libreadline8-8.2.13-2.1 ########################################
[ 20s] bash-5.2.37-20.1 ########################################
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[ 20s] xz-5.8.1-1.1 ########################################
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[ 21s] permctl-1699_20250120-1.2 ########################################
[ 21s] libmpc3-1.3.1-1.5 ########################################
[ 21s] libisl23-0.27-1.1 ########################################
[ 26s] cpp15-15.1.1+git10189-1.1 ########################################
[ 26s] dwz-0.15-6.1 ########################################
[ 26s] libgfortran5-15.1.1+git10189-1.1 ########################################
[ 26s] libblas3-3.12.1-1.1 ########################################
[ 26s] update-alternatives: using /usr/lib64/blas/libblas.so.3 to provide /usr/lib64/libblas.so.3 (libblas.so.3_riscv64) in auto mode
[ 26s] libcblas3-3.12.1-1.1 ########################################
[ 26s] update-alternatives: using /usr/lib64/blas/libcblas.so.3 to provide /usr/lib64/libcblas.so.3 (libcblas.so.3_riscv64) in auto mode
[ 27s] liblapack3-3.12.1-1.1 ########################################
[ 27s] update-alternatives: using /usr/lib64/lapack/liblapack.so.3 to provide /usr/lib64/liblapack.so.3 (liblapack.so.3_riscv64) in auto mode
[ 27s] diffutils-3.12-1.1 ########################################
[ 27s] libaudit1-4.0.2-4.1 ########################################
[ 27s] libgdbm6-1.24-2.1 ########################################
[ 27s] libjitterentropy3-3.6.3-1.1 ########################################
[ 27s] libpcre2-8-0-10.45-2.1 ########################################
[ 27s] libselinux1-3.9-2.1 ########################################
[ 27s] sed-4.9-2.2 ########################################
[ 28s] grep-3.12-1.1 ########################################
[ 28s] findutils-4.10.0-2.1 ########################################
[ 28s] libmount1-2.41.1-2.1 ########################################
[ 28s] tar-1.35-4.1 ########################################
[ 28s] libgdbm_compat4-1.24-2.1 ########################################
[ 31s] perl-5.42.0-1.1 ########################################
[ 32s] perl-rpm-packaging-1.2-1.1 ########################################
[ 32s] cpp-15-1.1 ########################################
[ 32s] gzip-1.14-1.1 ########################################
[ 32s] m4-1.4.20-3.1 ########################################
[ 32s] make-4.4.1-3.1 ########################################
[ 32s] bzip2-1.0.8-5.3 ########################################
[ 32s] ncurses-utils-6.5.20250726-79.1 ########################################
[ 32s] libfdisk1-2.41.1-2.1 ########################################
[ 32s] libasm1-0.192-2.1 ########################################
[ 32s] elfutils-0.192-2.1 ########################################
[ 32s] libxml2-2-2.13.8-3.1 ########################################
[ 33s] libasan8-15.1.1+git10189-1.1 ########################################
[ 33s] liblsan0-15.1.1+git10189-1.1 ########################################
[ 33s] libtsan2-15.1.1+git10189-1.1 ########################################
[ 33s] libubsan1-15.1.1+git10189-1.1 ########################################
[ 33s] libctf-nobfd0-2.43-10.1 ########################################
[ 33s] libctf0-2.43-10.1 ########################################
[ 37s] binutils-2.43-10.1 ########################################
[ 37s] update-alternatives: using /usr/bin/ld.bfd to provide /usr/bin/ld (ld) in auto mode
[ 37s] envsubst-mini-0.25.1-1.1 ########################################
[ 38s] gettext-runtime-mini-0.25.1-1.1 ########################################
[ 38s] glibc-gconv-modules-extra-2.41-3.1 ########################################
[ 39s] gettext-tools-mini-0.25.1-1.1 ########################################
[ 39s] glibc-locale-base-2.41-3.1 ########################################
[ 39s] libalternatives1-1.2+31.da24cd4-1.1 ########################################
[ 39s] alts-1.2+31.da24cd4-1.1 ########################################
[ 39s] lua-interpreter-5-2.1 ########################################
[ 39s] lua54-5.4.8-3.1 ########################################
[ 39s] libatomic1-15.1.1+git10189-1.1 ########################################
[ 39s] libattr1-2.5.2-1.1 ########################################
[ 40s] coreutils-9.7-3.1 ########################################
[ 40s] libopenssl3-3.5.2-1.1 ########################################
[ 43s] python313-base-3.13.5-7.1 ########################################
[ 44s] libpython3_13-1_0-3.13.5-7.1 ########################################
[ 47s] python311-base-3.11.13-7.1 ########################################
[ 48s] libpython3_11-1_0-3.11.13-7.1 ########################################
[ 50s] python312-base-3.12.11-4.1 ########################################
[ 51s] libpython3_12-1_0-3.12.11-4.1 ########################################
[ 51s] aaa_base-84.87+git20250429.1cad3bc-1.1########################################
[ 51s] Updating /etc/sysconfig/language ...
[ 51s] Updating /etc/sysconfig/proxy ...
[ 51s] aaa_base-malloccheck-84.87+git20250429########################################
[ 54s] python312-numpy-2.2.2-6.1 ########################################
[ 57s] python311-numpy-2.2.2-6.1 ########################################
[ 57s] python313-packaging-25.0-1.1 ########################################
[ 57s] python-rpm-packaging-20210526+a18ca48-########################################
[ 59s] python313-numpy-2.2.2-6.1 ########################################
[ 60s] systemd-rpm-macros-26-1.1 ########################################
[ 60s] linux-glibc-devel-6.15-1.1 ########################################
[ 60s] permissions-config-1699_20250120-1.2 ########################################
[ 61s] Updating /etc/sysconfig/security ...
[ 61s] Checking permissions and ownerships - using the permissions files
[ 61s] /usr/share/permissions/permissions
[ 61s] /usr/share/permissions/permissions.easy
[ 61s] /etc/permissions.local
[ 61s] /usr/sbin/unix_chkpwd: setting to root:shadow 4755 (wrong owner/group root:root)
[ 61s] permissions-1699_20250120-1.2 ########################################
[ 61s] pam-1.7.1-1.1 ########################################
[ 61s] polkit-default-privs-1550+20250721.f1b########################################
[ 61s] Updating /etc/sysconfig/security ...
[ 62s] can't open /etc/polkit-1/rules.d/90-default-privs.rules.new: No such file or directory
[ 62s] warning: %post(polkit-default-privs-1550+20250721.f1b71a3-1.1.noarch) scriptlet failed, exit status 2
[ 62s] debugedit-5.1-1.1 ########################################
[ 62s] libcap-ng0-0.8.5-1.1 ########################################
[ 62s] libfl2-2.6.4-7.1 ########################################
[ 62s] libfl-devel-2.6.4-7.1 ########################################
[ 62s] libgpg-error0-1.55-1.1 ########################################
[ 62s] libgcrypt20-1.11.1-3.2 ########################################
[ 62s] rpm-config-SUSE-20250423-1.1 ########################################
[ 63s] rpm-4.20.1-6.1 ########################################
[ 63s] Updating /etc/sysconfig/services ...
[ 63s] libitm1-15.1.1+git10189-1.1 ########################################
[ 63s] liblz1-1.15-1.1 ########################################
[ 63s] libmagic1-5.46-4.1 ########################################
[ 64s] librpmbuild10-4.20.1-6.1 ########################################
[ 64s] liblz4-1-1.10.0-2.1 ########################################
[ 64s] libarchive13-3.8.1-1.1 ########################################
[ 64s] libpkgconf5-2.2.0-1.1 ########################################
[ 64s] pkgconf-2.2.0-1.1 ########################################
[ 64s] pkgconf-pkg-config-2.2.0-1.1 ########################################
[ 64s] blas-devel-3.12.1-1.1 ########################################
[ 64s] cblas-devel-3.12.1-1.1 ########################################
[ 64s] lapack-devel-3.12.1-1.1 ########################################
[ 64s] libxcrypt-devel-4.4.38-1.1 ########################################
[ 64s] glibc-devel-2.41-3.1 ########################################
[ 88s] gcc15-15.1.1+git10189-1.1 ########################################
[ 88s] gcc15-PIE-15.1.1+git10189-1.1 ########################################
[ 88s] gcc-15-1.1 ########################################
[ 88s] python311-devel-3.11.13-7.1 ########################################
[ 88s] python312-devel-3.12.11-4.1 ########################################
[ 89s] python313-devel-3.13.5-7.1 ########################################
[ 89s] libseccomp2-2.6.0-2.1 ########################################
[ 89s] file-5.46-4.1 ########################################
[ 89s] libsmartcols1-2.41.1-2.1 ########################################
[ 89s] util-linux-2.41.1-2.1 ########################################
[ 89s] patch-2.8-1.1 ########################################
[ 89s] which-2.23-1.1 ########################################
[ 90s] rpm-build-4.20.1-6.1 ########################################
[ 90s] build-compare-20240801T083050.024a3a7-########################################
[ 90s] python313-numpy-devel-2.2.2-6.1 ########################################
[ 90s] python312-numpy-devel-2.2.2-6.1 ########################################
[ 90s] python311-numpy-devel-2.2.2-6.1 ########################################
[ 90s] gcc-PIE-15-1.1 ########################################
[ 90s] flex-2.6.4-7.1 ########################################
[ 93s] rpmlint-mini-2.7.0+git20250710.a7f0a67########################################
[ 93s] post-build-checks-84.87+git20250725.0c########################################
[ 93s] python312-setuptools-70.0.0-1.1 ########################################
[ 94s] python311-setuptools-70.0.0-1.1 ########################################
[ 95s] python313-setuptools-70.0.0-1.1 ########################################
[ 95s] compat-usrmerge-build-84.87-5.5 ########################################
[ 95s] brp-check-suse-84.87+git20230324.8680c########################################
[ 101s] qemu-linux-user-10.0.2-84.2 ########################################
[ 101s] build-mkbaselibs-20250708-1.1 ########################################
[ 101s] fdupes-2.4.0-1.1 ########################################
[ 102s] kernel-obs-build-6.15.8-1.1 ########################################
[ 107s] now finalizing build dir...
[ 107s] ... running 01-add_abuild_user_to_trusted_group
[ 108s] ... running 02-set_timezone_to_utc
[ 108s] ... running 03-set-permissions-secure
[ 108s] ... running 11-hack_uname_version_to_kernel_version
[ 111s] setting SOURCE_DATE_EPOCH_MTIME to 1728574597
[ 117s] -----------------------------------------------------------------
[ 117s] I have the following modifications for python-biopython.spec:
[ 118s] 26c26
[ 118s] < Release: 0
[ 118s] ---
[ 118s] > Release: 1.1
[ 121s] build target is riscv64-suse-linux
[ 121s] -----------------------------------------------------------------
[ 121s] ----- building python-biopython.spec (user abuild)
[ 121s] -----------------------------------------------------------------
[ 121s] -----------------------------------------------------------------
[ 124s] setting SOURCE_DATE_EPOCH_MTIME to 1728574597
[ 125s] + exec rpmbuild -ba --define '_srcdefattr (-,root,root)' --nosignature --target=riscv64-suse-linux --undefine _enable_debug_packages --define 'disturl obs://build.opensuse.org/home:lalala123:RISCV/standard/1e7837d0ed5576a9b028513eb152e979-failed_python-biopython' /home/abuild/rpmbuild/SOURCES/python-biopython.spec
[ 125s] Building target platforms: riscv64-suse-linux
[ 125s] Building for target riscv64-suse-linux
[ 133s] using SOURCE_DATE_EPOCH with value 1728574596 as build time
[ 133s] Executing(%mkbuilddir): /usr/bin/env QEMU_STACK_SIZE=64M /usr/bin/bash -e /var/tmp/rpm-tmp.u6WGQo
[ 133s] Executing(%prep): /usr/bin/env QEMU_STACK_SIZE=64M /usr/bin/bash -e /var/tmp/rpm-tmp.ymCHvS
[ 134s] + umask 022
[ 134s] + cd /home/abuild/rpmbuild/BUILD/python-biopython-1.84-build
[ 134s] + cd /home/abuild/rpmbuild/BUILD/python-biopython-1.84-build
[ 134s] + rm -rf biopython-1.84
[ 134s] + /usr/lib/rpm/rpmuncompress -x /home/abuild/rpmbuild/SOURCES/biopython-1.84.tar.gz
[ 136s] + STATUS=0
[ 136s] + '[' 0 -ne 0 ']'
[ 136s] + cd biopython-1.84
[ 136s] + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
[ 136s] + find -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' '{}' ';'
[ 171s] + mv -v Doc/examples examples
[ 171s] renamed 'Doc/examples' -> 'examples'
[ 171s] + RPM_EC=0
[ 171s] ++ jobs -p
[ 171s] + exit 0
[ 171s] Executing(%build): /usr/bin/env QEMU_STACK_SIZE=64M /usr/bin/bash -e /var/tmp/rpm-tmp.oSopmg
[ 171s] + umask 022
[ 171s] + cd /home/abuild/rpmbuild/BUILD/python-biopython-1.84-build
[ 171s] + /usr/bin/rm -rf /home/abuild/rpmbuild/BUILD/python-biopython-1.84-build/BUILDROOT
[ 171s] ++ dirname /home/abuild/rpmbuild/BUILD/python-biopython-1.84-build/BUILDROOT
[ 171s] + /usr/bin/mkdir -p /home/abuild/rpmbuild/BUILD/python-biopython-1.84-build
[ 171s] + /usr/bin/mkdir /home/abuild/rpmbuild/BUILD/python-biopython-1.84-build/BUILDROOT
[ 171s] + cd biopython-1.84
[ 171s] + ref=/usr/lib/rpm
[ 171s] + mints=0
[ 171s] + case $(uname -m) in
[ 171s] ++ uname -m
[ 171s] + mints=20160911
[ 171s] + for s in guess sub
[ 171s] ++ find -maxdepth 8 -name config.guess
[ 171s] + for s in guess sub
[ 171s] ++ find -maxdepth 8 -name config.sub
[ 171s] + export LANG=en_US.UTF-8
[ 171s] + LANG=en_US.UTF-8
[ 171s] ++ '[' -f _current_flavor ']'
[ 171s] ++ true
[ 171s] + last_flavor=
[ 171s] + '[' -z '' ']'
[ 171s] + last_flavor=tmp
[ 171s] + '[' tmp '!=' python311 ']'
[ 171s] + '[' -d build ']'
[ 171s] + '[' -d _build.python311 ']'
[ 171s] + echo python311
[ 171s] + python_flavor=python311
[ 171s] + /usr/bin/python3.11 setup.py build '--executable=/usr/bin/python3.11 -s'
[ 173s] running build
[ 173s] running build_py
[ 173s] creating build
[ 173s] creating build/lib.linux-riscv64-cpython-311
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/File.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/LogisticRegression.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/MarkovModel.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/MaxEntropy.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/NaiveBayes.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/kNN.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-311/Bio
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Affy
[ 173s] copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-311/Bio/Affy
[ 173s] copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Affy
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Align/Applications
[ 173s] copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-riscv64-cpython-311/Bio/Align/Applications
[ 173s] copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-riscv64-cpython-311/Bio/Align/Applications
[ 173s] copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-riscv64-cpython-311/Bio/Align/Applications
[ 173s] copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-riscv64-cpython-311/Bio/Align/Applications
[ 173s] copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-riscv64-cpython-311/Bio/Align/Applications
[ 173s] copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-riscv64-cpython-311/Bio/Align/Applications
[ 173s] copying Bio/Align/Applications/_Prank.py -> build/lib.linux-riscv64-cpython-311/Bio/Align/Applications
[ 173s] copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-riscv64-cpython-311/Bio/Align/Applications
[ 173s] copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-riscv64-cpython-311/Bio/Align/Applications
[ 173s] copying Bio/Align/Applications/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Align/Applications
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices
[ 173s] copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/AlignIO
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Alphabet
[ 173s] copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Alphabet
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Application
[ 173s] copying Bio/Application/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Application
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Blast
[ 173s] copying Bio/Blast/Applications.py -> build/lib.linux-riscv64-cpython-311/Bio/Blast
[ 173s] copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-311/Bio/Blast
[ 173s] copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-311/Bio/Blast
[ 173s] copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Blast
[ 173s] copying Bio/Blast/_parser.py -> build/lib.linux-riscv64-cpython-311/Bio/Blast
[ 173s] copying Bio/Blast/_writers.py -> build/lib.linux-riscv64-cpython-311/Bio/Blast
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/CAPS
[ 173s] copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/CAPS
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Cluster
[ 173s] copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Cluster
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/codonalign
[ 173s] copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/codonalign
[ 173s] copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-311/Bio/codonalign
[ 173s] copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-311/Bio/codonalign
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Compass
[ 173s] copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Compass
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Data
[ 173s] copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-311/Bio/Data
[ 173s] copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-311/Bio/Data
[ 173s] copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-311/Bio/Data
[ 173s] copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Data
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Emboss
[ 173s] copying Bio/Emboss/Applications.py -> build/lib.linux-riscv64-cpython-311/Bio/Emboss
[ 173s] copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-311/Bio/Emboss
[ 173s] copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-311/Bio/Emboss
[ 173s] copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Emboss
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Entrez
[ 173s] copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-311/Bio/Entrez
[ 173s] copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Entrez
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/ExPASy
[ 173s] copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-311/Bio/ExPASy
[ 173s] copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-311/Bio/ExPASy
[ 173s] copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-311/Bio/ExPASy
[ 173s] copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-311/Bio/ExPASy
[ 173s] copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/ExPASy
[ 173s] copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-311/Bio/ExPASy
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/GenBank
[ 173s] copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-311/Bio/GenBank
[ 173s] copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-311/Bio/GenBank
[ 173s] copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/GenBank
[ 173s] copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-311/Bio/GenBank
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Geo
[ 173s] copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-311/Bio/Geo
[ 173s] copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Geo
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Graphics
[ 173s] copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics
[ 173s] copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics
[ 173s] copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics
[ 173s] copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics
[ 173s] copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics
[ 173s] copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics
[ 173s] copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Graphics/GenomeDiagram
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/HMM
[ 173s] copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-riscv64-cpython-311/Bio/HMM
[ 173s] copying Bio/HMM/MarkovModel.py -> build/lib.linux-riscv64-cpython-311/Bio/HMM
[ 173s] copying Bio/HMM/Trainer.py -> build/lib.linux-riscv64-cpython-311/Bio/HMM
[ 173s] copying Bio/HMM/Utilities.py -> build/lib.linux-riscv64-cpython-311/Bio/HMM
[ 173s] copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/HMM
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/KEGG
[ 173s] copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-311/Bio/KEGG
[ 173s] copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/KEGG
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/KEGG/Compound
[ 173s] copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/KEGG/Compound
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/KEGG/Enzyme
[ 173s] copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/KEGG/Enzyme
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/KEGG/Gene
[ 173s] copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/KEGG/Gene
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/KEGG/Map
[ 173s] copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/KEGG/Map
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/PDB/mmtf
[ 173s] copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB/mmtf
[ 173s] copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB/mmtf
[ 173s] copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB/mmtf
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/KEGG/KGML
[ 173s] copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-311/Bio/KEGG/KGML
[ 173s] copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-311/Bio/KEGG/KGML
[ 173s] copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/KEGG/KGML
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Medline
[ 173s] copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Medline
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/motifs/applications
[ 173s] copying Bio/motifs/applications/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs/applications
[ 173s] copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs/applications
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/motifs/jaspar
[ 173s] copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs/jaspar
[ 173s] copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-311/Bio/motifs/jaspar
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Nexus
[ 173s] copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-311/Bio/Nexus
[ 173s] copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-311/Bio/Nexus
[ 173s] copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-311/Bio/Nexus
[ 173s] copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-311/Bio/Nexus
[ 173s] copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Nexus
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/NMR
[ 173s] copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-311/Bio/NMR
[ 173s] copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/NMR
[ 173s] copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-311/Bio/NMR
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Pathway
[ 173s] copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Pathway
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Pathway/Rep
[ 173s] copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-311/Bio/Pathway/Rep
[ 173s] copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-311/Bio/Pathway/Rep
[ 173s] copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Pathway/Rep
[ 173s] copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/PDBMLParser.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/alphafold_db.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/binary_cif.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/phenotype
[ 173s] copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/phenotype
[ 173s] copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-311/Bio/phenotype
[ 173s] copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-311/Bio/phenotype
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/PopGen
[ 173s] copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/PopGen
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/PopGen/GenePop
[ 173s] copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-riscv64-cpython-311/Bio/PopGen/GenePop
[ 173s] copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-riscv64-cpython-311/Bio/PopGen/GenePop
[ 173s] copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-311/Bio/PopGen/GenePop
[ 173s] copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-311/Bio/PopGen/GenePop
[ 173s] copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/PopGen/GenePop
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Restriction
[ 173s] copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-311/Bio/Restriction
[ 173s] copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-311/Bio/Restriction
[ 173s] copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-311/Bio/Restriction
[ 173s] copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Restriction
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SCOP
[ 173s] copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-311/Bio/SCOP
[ 173s] copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-311/Bio/SCOP
[ 173s] copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-311/Bio/SCOP
[ 173s] copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-311/Bio/SCOP
[ 173s] copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-311/Bio/SCOP
[ 173s] copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-311/Bio/SCOP
[ 173s] copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SCOP
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SearchIO
[ 173s] copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO
[ 173s] copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO
[ 173s] copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO
[ 173s] copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO
[ 173s] copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SearchIO/_model
[ 173s] copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/_model
[ 173s] copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/_model
[ 173s] copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/_model
[ 173s] copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/_model
[ 173s] copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/_model
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SearchIO/BlastIO
[ 173s] copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/BlastIO
[ 173s] copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/BlastIO
[ 173s] copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/BlastIO
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SearchIO/HHsuiteIO
[ 173s] copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/HHsuiteIO
[ 173s] copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/HHsuiteIO
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SearchIO/HmmerIO
[ 173s] copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/HmmerIO
[ 173s] copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/HmmerIO
[ 173s] copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/HmmerIO
[ 173s] copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/HmmerIO
[ 173s] copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/HmmerIO
[ 173s] copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/HmmerIO
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SearchIO/ExonerateIO
[ 173s] copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/ExonerateIO
[ 173s] copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/ExonerateIO
[ 173s] copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/ExonerateIO
[ 173s] copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/ExonerateIO
[ 173s] copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/ExonerateIO
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SearchIO/InterproscanIO
[ 173s] copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/InterproscanIO
[ 173s] copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-311/Bio/SearchIO/InterproscanIO
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/GfaIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SeqUtils
[ 173s] copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqUtils
[ 173s] copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqUtils
[ 173s] copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqUtils
[ 173s] copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqUtils
[ 173s] copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqUtils
[ 173s] copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqUtils
[ 173s] copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-311/Bio/SeqUtils
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Sequencing
[ 173s] copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-311/Bio/Sequencing
[ 173s] copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-311/Bio/Sequencing
[ 173s] copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Sequencing
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Sequencing/Applications
[ 173s] copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-riscv64-cpython-311/Bio/Sequencing/Applications
[ 173s] copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Sequencing/Applications
[ 173s] copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-riscv64-cpython-311/Bio/Sequencing/Applications
[ 173s] copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-riscv64-cpython-311/Bio/Sequencing/Applications
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SVDSuperimposer
[ 173s] copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SVDSuperimposer
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/SwissProt
[ 173s] copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-311/Bio/SwissProt
[ 173s] copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/SwissProt
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/TogoWS
[ 173s] copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/TogoWS
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Phylo/Applications
[ 173s] copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/Applications
[ 173s] copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/Applications
[ 173s] copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/Applications
[ 173s] copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/Applications
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/Phylo/PAML
[ 173s] copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/PAML
[ 173s] copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/PAML
[ 173s] copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/PAML
[ 173s] copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/PAML
[ 173s] copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/PAML
[ 173s] copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/PAML
[ 173s] copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/PAML
[ 173s] copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/PAML
[ 173s] copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-311/Bio/Phylo/PAML
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/UniGene
[ 173s] copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/UniGene
[ 173s] creating build/lib.linux-riscv64-cpython-311/Bio/UniProt
[ 173s] copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-311/Bio/UniProt
[ 173s] copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-311/Bio/UniProt
[ 173s] creating build/lib.linux-riscv64-cpython-311/BioSQL
[ 173s] copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-311/BioSQL
[ 173s] copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-311/BioSQL
[ 173s] copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-311/BioSQL
[ 173s] copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-311/BioSQL
[ 173s] copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-311/BioSQL
[ 173s] running egg_info
[ 173s] writing biopython.egg-info/PKG-INFO
[ 173s] writing dependency_links to biopython.egg-info/dependency_links.txt
[ 173s] writing requirements to biopython.egg-info/requires.txt
[ 173s] writing top-level names to biopython.egg-info/top_level.txt
[ 173s] reading manifest file 'biopython.egg-info/SOURCES.txt'
[ 174s] reading manifest template 'MANIFEST.in'
[ 174s] warning: no files found matching '*.fasta' under directory 'Doc'
[ 174s] warning: no files found matching '*.aln' under directory 'Doc/examples'
[ 174s] warning: no files found matching '*.faa' under directory 'Doc/examples'
[ 174s] warning: no files found matching '*.xpk' under directory 'Doc/examples'
[ 174s] warning: no files found matching '*.gbk' under directory 'Doc/examples'
[ 174s] warning: no files found matching '*.sth' under directory 'Doc/examples'
[ 174s] warning: no files found matching '*.bgz' under directory 'Doc/examples'
[ 174s] warning: no files found matching '*.xml' under directory 'Doc/examples'
[ 174s] warning: no files found matching '*.psl' under directory 'Doc/examples'
[ 174s] warning: no files found matching '*.dnd' under directory 'Doc/examples'
[ 174s] warning: no files found matching '*.csv' under directory 'Doc/examples'
[ 174s] warning: no files found matching 'Doc/examples/ls_orchid.gbk.gz'
[ 174s] warning: no files found matching 'Doc/examples/ls_orchid.gbk.bz2'
[ 174s] warning: no files found matching 'Doc/examples/ec_5.4.2.2.txt'
[ 174s] warning: no previously-included files found matching 'Doc/_build/'
[ 174s] warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
[ 174s] warning: no previously-included files matching '*.pyc' found anywhere in distribution
[ 174s] warning: no previously-included files matching '*.pyo' found anywhere in distribution
[ 174s] warning: no previously-included files matching '*.py{}' found anywhere in distribution
[ 174s] warning: no previously-included files matching '*.py-e' found anywhere in distribution
[ 174s] warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
[ 174s] adding license file 'LICENSE'
[ 174s] adding license file 'LICENSE.rst'
[ 175s] writing manifest file 'biopython.egg-info/SOURCES.txt'
[ 175s] /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration.
[ 175s] !!
[ 175s]
[ 175s] ********************************************************************************
[ 175s] ############################
[ 175s] # Package would be ignored #
[ 175s] ############################
[ 175s] Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1],
[ 175s] but it is absent from setuptools' `packages` configuration.
[ 175s]
[ 175s] This leads to an ambiguous overall configuration. If you want to distribute this
[ 175s] package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added
[ 175s] to the `packages` configuration field.
[ 175s]
[ 175s] Alternatively, you can also rely on setuptools' discovery methods
[ 175s] (for example by using `find_namespace_packages(...)`/`find_namespace:`
[ 175s] instead of `find_packages(...)`/`find:`).
[ 175s]
[ 175s] You can read more about "package discovery" on setuptools documentation page:
[ 175s]
[ 175s] - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
[ 175s]
[ 175s] If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are
[ 175s] already explicitly excluding 'Bio.Align.substitution_matrices.data' via
[ 175s] `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
[ 175s] you can try to use `exclude_package_data`, or `include-package-data=False` in
[ 175s] combination with a more fine grained `package-data` configuration.
[ 175s]
[ 175s] You can read more about "package data files" on setuptools documentation page:
[ 175s]
[ 175s] - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[ 175s]
[ 175s]
[ 175s] [^1]: For Python, any directory (with suitable naming) can be imported,
[ 175s] even if it does not contain any `.py` files.
[ 175s] On the other hand, currently there is no concept of package data
[ 175s] directory, all directories are treated like packages.
[ 175s] ********************************************************************************
[ 175s]
[ 175s] !!
[ 175s] check.warn(importable)
[ 175s] /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration.
[ 175s] !!
[ 175s]
[ 175s] ********************************************************************************
[ 175s] ############################
[ 175s] # Package would be ignored #
[ 175s] ############################
[ 175s] Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1],
[ 175s] but it is absent from setuptools' `packages` configuration.
[ 175s]
[ 175s] This leads to an ambiguous overall configuration. If you want to distribute this
[ 175s] package, please make sure that 'Bio.Entrez.DTDs' is explicitly added
[ 175s] to the `packages` configuration field.
[ 175s]
[ 175s] Alternatively, you can also rely on setuptools' discovery methods
[ 175s] (for example by using `find_namespace_packages(...)`/`find_namespace:`
[ 175s] instead of `find_packages(...)`/`find:`).
[ 175s]
[ 175s] You can read more about "package discovery" on setuptools documentation page:
[ 175s]
[ 175s] - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
[ 175s]
[ 175s] If you don't want 'Bio.Entrez.DTDs' to be distributed and are
[ 175s] already explicitly excluding 'Bio.Entrez.DTDs' via
[ 175s] `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
[ 175s] you can try to use `exclude_package_data`, or `include-package-data=False` in
[ 175s] combination with a more fine grained `package-data` configuration.
[ 175s]
[ 175s] You can read more about "package data files" on setuptools documentation page:
[ 175s]
[ 175s] - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[ 175s]
[ 175s]
[ 175s] [^1]: For Python, any directory (with suitable naming) can be imported,
[ 175s] even if it does not contain any `.py` files.
[ 175s] On the other hand, currently there is no concept of package data
[ 175s] directory, all directories are treated like packages.
[ 175s] ********************************************************************************
[ 175s]
[ 175s] !!
[ 175s] check.warn(importable)
[ 175s] /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration.
[ 175s] !!
[ 175s]
[ 175s] ********************************************************************************
[ 175s] ############################
[ 175s] # Package would be ignored #
[ 175s] ############################
[ 175s] Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1],
[ 175s] but it is absent from setuptools' `packages` configuration.
[ 175s]
[ 175s] This leads to an ambiguous overall configuration. If you want to distribute this
[ 175s] package, please make sure that 'Bio.Entrez.XSDs' is explicitly added
[ 175s] to the `packages` configuration field.
[ 175s]
[ 175s] Alternatively, you can also rely on setuptools' discovery methods
[ 175s] (for example by using `find_namespace_packages(...)`/`find_namespace:`
[ 175s] instead of `find_packages(...)`/`find:`).
[ 175s]
[ 175s] You can read more about "package discovery" on setuptools documentation page:
[ 175s]
[ 175s] - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
[ 175s]
[ 175s] If you don't want 'Bio.Entrez.XSDs' to be distributed and are
[ 175s] already explicitly excluding 'Bio.Entrez.XSDs' via
[ 175s] `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
[ 175s] you can try to use `exclude_package_data`, or `include-package-data=False` in
[ 175s] combination with a more fine grained `package-data` configuration.
[ 175s]
[ 175s] You can read more about "package data files" on setuptools documentation page:
[ 175s]
[ 175s] - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[ 175s]
[ 175s]
[ 175s] [^1]: For Python, any directory (with suitable naming) can be imported,
[ 175s] even if it does not contain any `.py` files.
[ 175s] On the other hand, currently there is no concept of package data
[ 175s] directory, all directories are treated like packages.
[ 175s] ********************************************************************************
[ 175s]
[ 175s] !!
[ 175s] check.warn(importable)
[ 175s] copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-311/Bio
[ 175s] copying Bio/py.typed -> build/lib.linux-riscv64-cpython-311/Bio
[ 175s] copying Bio/Align/_aligncore.c -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 175s] copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 175s] copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-311/Bio/Align
[ 175s] creating build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-311/Bio/Align/substitution_matrices/data
[ 175s] copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-311/Bio/Cluster
[ 175s] copying Bio/Cluster/cluster.h -> build/lib.linux-riscv64-cpython-311/Bio/Cluster
[ 175s] copying Bio/Cluster/clustermodule.c -> build/lib.linux-riscv64-cpython-311/Bio/Cluster
[ 175s] creating build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 175s] copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/DTDs
[ 176s] creating build/lib.linux-riscv64-cpython-311/Bio/Entrez/XSDs
[ 176s] copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/XSDs
[ 176s] copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/XSDs
[ 176s] copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-riscv64-cpython-311/Bio/Entrez/XSDs
[ 176s] copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-311/Bio/motifs
[ 176s] copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-311/Bio/Nexus
[ 176s] copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 176s] copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 176s] copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-311/Bio/PDB
[ 176s] copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-311/Bio/SeqIO
[ 176s] copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-311/BioSQL
[ 176s] running build_ext
[ 176s] building 'Bio.Align._codonaligner' extension
[ 176s] creating build/temp.linux-riscv64-cpython-311
[ 176s] creating build/temp.linux-riscv64-cpython-311/Bio
[ 176s] creating build/temp.linux-riscv64-cpython-311/Bio/Align
[ 176s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-311/Bio/Align/_codonaligner.o
[ 184s] gcc -shared build/temp.linux-riscv64-cpython-311/Bio/Align/_codonaligner.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-311/Bio/Align/_codonaligner.cpython-311-riscv64-linux-gnu.so
[ 185s] building 'Bio.Align._pairwisealigner' extension
[ 185s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-311/Bio/Align/_pairwisealigner.o
[ 258s] gcc -shared build/temp.linux-riscv64-cpython-311/Bio/Align/_pairwisealigner.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-311/Bio/Align/_pairwisealigner.cpython-311-riscv64-linux-gnu.so
[ 259s] building 'Bio.Align._aligncore' extension
[ 260s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/Align/_aligncore.c -o build/temp.linux-riscv64-cpython-311/Bio/Align/_aligncore.o
[ 264s] gcc -shared build/temp.linux-riscv64-cpython-311/Bio/Align/_aligncore.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-311/Bio/Align/_aligncore.cpython-311-riscv64-linux-gnu.so
[ 265s] building 'Bio.cpairwise2' extension
[ 265s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-311/Bio/cpairwise2module.o
[ 267s] Bio/cpairwise2module.c: In function ‘_get_match_score’:
[ 267s] Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations]
[ 267s] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist)))
[ 267s] | ^~
[ 267s] In file included from /usr/include/python3.11/Python.h:95,
[ 267s] from Bio/cpairwise2module.c:16:
[ 267s] /usr/include/python3.11/ceval.h:27:43: note: declared here
[ 267s] 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords(
[ 267s] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 271s] gcc -shared build/temp.linux-riscv64-cpython-311/Bio/cpairwise2module.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-311/Bio/cpairwise2.cpython-311-riscv64-linux-gnu.so
[ 271s] building 'Bio.Nexus.cnexus' extension
[ 271s] creating build/temp.linux-riscv64-cpython-311/Bio/Nexus
[ 271s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-311/Bio/Nexus/cnexus.o
[ 275s] gcc -shared build/temp.linux-riscv64-cpython-311/Bio/Nexus/cnexus.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-311/Bio/Nexus/cnexus.cpython-311-riscv64-linux-gnu.so
[ 275s] building 'Bio.motifs._pwm' extension
[ 275s] creating build/temp.linux-riscv64-cpython-311/Bio/motifs
[ 275s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-311/Bio/motifs/_pwm.o
[ 279s] gcc -shared build/temp.linux-riscv64-cpython-311/Bio/motifs/_pwm.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-311/Bio/motifs/_pwm.cpython-311-riscv64-linux-gnu.so
[ 279s] building 'Bio.Cluster._cluster' extension
[ 279s] creating build/temp.linux-riscv64-cpython-311/Bio/Cluster
[ 279s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-311/Bio/Cluster/cluster.o
[ 310s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-311/Bio/Cluster/clustermodule.o
[ 321s] gcc -shared build/temp.linux-riscv64-cpython-311/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-311/Bio/Cluster/clustermodule.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-311/Bio/Cluster/_cluster.cpython-311-riscv64-linux-gnu.so
[ 321s] building 'Bio.PDB.ccealign' extension
[ 321s] creating build/temp.linux-riscv64-cpython-311/Bio/PDB
[ 321s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-311/Bio/PDB/ccealignmodule.o
[ 327s] gcc -shared build/temp.linux-riscv64-cpython-311/Bio/PDB/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-311/Bio/PDB/ccealign.cpython-311-riscv64-linux-gnu.so
[ 328s] building 'Bio.PDB.kdtrees' extension
[ 328s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-311/Bio/PDB/kdtrees.o
[ 335s] gcc -shared build/temp.linux-riscv64-cpython-311/Bio/PDB/kdtrees.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-311/Bio/PDB/kdtrees.cpython-311-riscv64-linux-gnu.so
[ 336s] building 'Bio.PDB._bcif_helper' extension
[ 336s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-riscv64-cpython-311/Bio/PDB/bcifhelpermodule.o
[ 340s] gcc -shared build/temp.linux-riscv64-cpython-311/Bio/PDB/bcifhelpermodule.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-311/Bio/PDB/_bcif_helper.cpython-311-riscv64-linux-gnu.so
[ 340s] building 'Bio.SeqIO._twoBitIO' extension
[ 340s] creating build/temp.linux-riscv64-cpython-311/Bio/SeqIO
[ 340s] gcc -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.11 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-311/Bio/SeqIO/_twoBitIO.o
[ 344s] gcc -shared build/temp.linux-riscv64-cpython-311/Bio/SeqIO/_twoBitIO.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-311/Bio/SeqIO/_twoBitIO.cpython-311-riscv64-linux-gnu.so
[ 345s] ++ '[' -f _current_flavor ']'
[ 345s] ++ cat _current_flavor
[ 345s] + last_flavor=python311
[ 345s] + '[' -z python311 ']'
[ 345s] + '[' python311 '!=' python312 ']'
[ 345s] + '[' -d build ']'
[ 345s] + mv build _build.python311
[ 345s] + '[' -d _build.python312 ']'
[ 345s] + echo python312
[ 345s] + python_flavor=python312
[ 345s] + /usr/bin/python3.12 setup.py build '--executable=/usr/bin/python3.12 -s'
[ 347s] running build
[ 347s] running build_py
[ 347s] creating build
[ 347s] creating build/lib.linux-riscv64-cpython-312
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/File.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/LogisticRegression.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/MaxEntropy.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/NaiveBayes.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/kNN.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-312/Bio
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Affy
[ 347s] copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy
[ 347s] copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
[ 347s] copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
[ 347s] copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
[ 347s] copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
[ 347s] copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
[ 347s] copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
[ 347s] copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
[ 347s] copying Bio/Align/Applications/_Prank.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
[ 347s] copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
[ 347s] copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
[ 347s] copying Bio/Align/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices
[ 347s] copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Alphabet
[ 347s] copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Alphabet
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Application
[ 347s] copying Bio/Application/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Application
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Blast
[ 347s] copying Bio/Blast/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
[ 347s] copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
[ 347s] copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
[ 347s] copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
[ 347s] copying Bio/Blast/_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
[ 347s] copying Bio/Blast/_writers.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/CAPS
[ 347s] copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/CAPS
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Cluster
[ 347s] copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/codonalign
[ 347s] copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign
[ 347s] copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign
[ 347s] copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Compass
[ 347s] copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Compass
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Data
[ 347s] copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
[ 347s] copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
[ 347s] copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
[ 347s] copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Emboss
[ 347s] copying Bio/Emboss/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss
[ 347s] copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss
[ 347s] copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss
[ 347s] copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Entrez
[ 347s] copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez
[ 347s] copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/ExPASy
[ 347s] copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
[ 347s] copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
[ 347s] copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
[ 347s] copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
[ 347s] copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
[ 347s] copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/GenBank
[ 347s] copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
[ 347s] copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
[ 347s] copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
[ 347s] copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Geo
[ 347s] copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo
[ 347s] copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Graphics
[ 347s] copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
[ 347s] copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
[ 347s] copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
[ 347s] copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
[ 347s] copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
[ 347s] copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
[ 347s] copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/HMM
[ 347s] copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM
[ 347s] copying Bio/HMM/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM
[ 347s] copying Bio/HMM/Trainer.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM
[ 347s] copying Bio/HMM/Utilities.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM
[ 347s] copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/KEGG
[ 347s] copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG
[ 347s] copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound
[ 347s] copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme
[ 347s] copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene
[ 347s] copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map
[ 347s] copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
[ 347s] copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
[ 347s] copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
[ 347s] copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
[ 347s] copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
[ 347s] copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
[ 347s] copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Medline
[ 347s] copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Medline
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/motifs/applications
[ 347s] copying Bio/motifs/applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications
[ 347s] copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar
[ 347s] copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar
[ 347s] copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Nexus
[ 347s] copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
[ 347s] copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
[ 347s] copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
[ 347s] copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
[ 347s] copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/NMR
[ 347s] copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR
[ 347s] copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR
[ 347s] copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Pathway
[ 347s] copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
[ 347s] copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
[ 347s] copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
[ 347s] copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
[ 347s] copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/PDBMLParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/alphafold_db.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/binary_cif.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/phenotype
[ 347s] copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype
[ 347s] copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype
[ 347s] copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/PopGen
[ 347s] copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
[ 347s] copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
[ 347s] copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
[ 347s] copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
[ 347s] copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
[ 347s] copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Restriction
[ 347s] copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
[ 347s] copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
[ 347s] copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
[ 347s] copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SCOP
[ 347s] copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
[ 347s] copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
[ 347s] copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
[ 347s] copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
[ 347s] copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
[ 347s] copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
[ 347s] copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO
[ 347s] copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
[ 347s] copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
[ 347s] copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
[ 347s] copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
[ 347s] copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
[ 347s] copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
[ 347s] copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
[ 347s] copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
[ 347s] copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
[ 347s] copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
[ 347s] copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
[ 347s] copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
[ 347s] copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO
[ 347s] copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO
[ 347s] copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
[ 347s] copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
[ 347s] copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
[ 347s] copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
[ 347s] copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
[ 347s] copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
[ 347s] copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
[ 347s] copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
[ 347s] copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
[ 347s] copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
[ 347s] copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
[ 347s] copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO
[ 347s] copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO
[ 347s] copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/GfaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
[ 347s] copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
[ 347s] copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
[ 347s] copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
[ 347s] copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
[ 347s] copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
[ 347s] copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
[ 347s] copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing
[ 347s] copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing
[ 347s] copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing
[ 347s] copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications
[ 347s] copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications
[ 347s] copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications
[ 347s] copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications
[ 347s] copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer
[ 347s] copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/SwissProt
[ 347s] copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt
[ 347s] copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/TogoWS
[ 347s] copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/TogoWS
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications
[ 347s] copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications
[ 347s] copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications
[ 347s] copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications
[ 347s] copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
[ 347s] copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
[ 347s] copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
[ 347s] copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
[ 347s] copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
[ 347s] copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
[ 347s] copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
[ 347s] copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
[ 347s] copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
[ 347s] copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/UniGene
[ 347s] copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniGene
[ 347s] creating build/lib.linux-riscv64-cpython-312/Bio/UniProt
[ 347s] copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt
[ 347s] copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt
[ 347s] creating build/lib.linux-riscv64-cpython-312/BioSQL
[ 347s] copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-312/BioSQL
[ 347s] copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-312/BioSQL
[ 347s] copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-312/BioSQL
[ 347s] copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-312/BioSQL
[ 347s] copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-312/BioSQL
[ 347s] running egg_info
[ 347s] writing biopython.egg-info/PKG-INFO
[ 347s] writing dependency_links to biopython.egg-info/dependency_links.txt
[ 347s] writing requirements to biopython.egg-info/requires.txt
[ 347s] writing top-level names to biopython.egg-info/top_level.txt
[ 348s] reading manifest file 'biopython.egg-info/SOURCES.txt'
[ 348s] reading manifest template 'MANIFEST.in'
[ 348s] warning: no files found matching '*.fasta' under directory 'Doc'
[ 348s] warning: no files found matching '*.aln' under directory 'Doc/examples'
[ 348s] warning: no files found matching '*.faa' under directory 'Doc/examples'
[ 348s] warning: no files found matching '*.xpk' under directory 'Doc/examples'
[ 348s] warning: no files found matching '*.gbk' under directory 'Doc/examples'
[ 348s] warning: no files found matching '*.sth' under directory 'Doc/examples'
[ 348s] warning: no files found matching '*.bgz' under directory 'Doc/examples'
[ 348s] warning: no files found matching '*.xml' under directory 'Doc/examples'
[ 348s] warning: no files found matching '*.psl' under directory 'Doc/examples'
[ 348s] warning: no files found matching '*.dnd' under directory 'Doc/examples'
[ 348s] warning: no files found matching '*.csv' under directory 'Doc/examples'
[ 348s] warning: no files found matching 'Doc/examples/ls_orchid.gbk.gz'
[ 348s] warning: no files found matching 'Doc/examples/ls_orchid.gbk.bz2'
[ 348s] warning: no files found matching 'Doc/examples/ec_5.4.2.2.txt'
[ 348s] warning: no previously-included files found matching 'Doc/_build/'
[ 348s] warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
[ 349s] warning: no previously-included files matching '*.pyc' found anywhere in distribution
[ 349s] warning: no previously-included files matching '*.pyo' found anywhere in distribution
[ 349s] warning: no previously-included files matching '*.py{}' found anywhere in distribution
[ 349s] warning: no previously-included files matching '*.py-e' found anywhere in distribution
[ 349s] warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
[ 349s] adding license file 'LICENSE'
[ 349s] adding license file 'LICENSE.rst'
[ 349s] writing manifest file 'biopython.egg-info/SOURCES.txt'
[ 349s] /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration.
[ 349s] !!
[ 349s]
[ 349s] ********************************************************************************
[ 349s] ############################
[ 349s] # Package would be ignored #
[ 349s] ############################
[ 349s] Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1],
[ 349s] but it is absent from setuptools' `packages` configuration.
[ 349s]
[ 349s] This leads to an ambiguous overall configuration. If you want to distribute this
[ 349s] package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added
[ 349s] to the `packages` configuration field.
[ 349s]
[ 349s] Alternatively, you can also rely on setuptools' discovery methods
[ 349s] (for example by using `find_namespace_packages(...)`/`find_namespace:`
[ 349s] instead of `find_packages(...)`/`find:`).
[ 349s]
[ 349s] You can read more about "package discovery" on setuptools documentation page:
[ 349s]
[ 349s] - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
[ 349s]
[ 349s] If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are
[ 349s] already explicitly excluding 'Bio.Align.substitution_matrices.data' via
[ 349s] `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
[ 349s] you can try to use `exclude_package_data`, or `include-package-data=False` in
[ 349s] combination with a more fine grained `package-data` configuration.
[ 349s]
[ 349s] You can read more about "package data files" on setuptools documentation page:
[ 349s]
[ 349s] - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[ 349s]
[ 349s]
[ 349s] [^1]: For Python, any directory (with suitable naming) can be imported,
[ 349s] even if it does not contain any `.py` files.
[ 349s] On the other hand, currently there is no concept of package data
[ 349s] directory, all directories are treated like packages.
[ 349s] ********************************************************************************
[ 349s]
[ 349s] !!
[ 349s] check.warn(importable)
[ 349s] /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration.
[ 349s] !!
[ 349s]
[ 349s] ********************************************************************************
[ 349s] ############################
[ 349s] # Package would be ignored #
[ 349s] ############################
[ 349s] Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1],
[ 349s] but it is absent from setuptools' `packages` configuration.
[ 349s]
[ 349s] This leads to an ambiguous overall configuration. If you want to distribute this
[ 349s] package, please make sure that 'Bio.Entrez.DTDs' is explicitly added
[ 349s] to the `packages` configuration field.
[ 349s]
[ 349s] Alternatively, you can also rely on setuptools' discovery methods
[ 349s] (for example by using `find_namespace_packages(...)`/`find_namespace:`
[ 349s] instead of `find_packages(...)`/`find:`).
[ 349s]
[ 349s] You can read more about "package discovery" on setuptools documentation page:
[ 349s]
[ 349s] - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
[ 349s]
[ 349s] If you don't want 'Bio.Entrez.DTDs' to be distributed and are
[ 349s] already explicitly excluding 'Bio.Entrez.DTDs' via
[ 349s] `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
[ 349s] you can try to use `exclude_package_data`, or `include-package-data=False` in
[ 349s] combination with a more fine grained `package-data` configuration.
[ 349s]
[ 349s] You can read more about "package data files" on setuptools documentation page:
[ 349s]
[ 349s] - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[ 349s]
[ 349s]
[ 349s] [^1]: For Python, any directory (with suitable naming) can be imported,
[ 349s] even if it does not contain any `.py` files.
[ 349s] On the other hand, currently there is no concept of package data
[ 349s] directory, all directories are treated like packages.
[ 349s] ********************************************************************************
[ 349s]
[ 349s] !!
[ 349s] check.warn(importable)
[ 349s] /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration.
[ 349s] !!
[ 349s]
[ 349s] ********************************************************************************
[ 349s] ############################
[ 349s] # Package would be ignored #
[ 349s] ############################
[ 349s] Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1],
[ 349s] but it is absent from setuptools' `packages` configuration.
[ 349s]
[ 349s] This leads to an ambiguous overall configuration. If you want to distribute this
[ 349s] package, please make sure that 'Bio.Entrez.XSDs' is explicitly added
[ 349s] to the `packages` configuration field.
[ 349s]
[ 349s] Alternatively, you can also rely on setuptools' discovery methods
[ 349s] (for example by using `find_namespace_packages(...)`/`find_namespace:`
[ 349s] instead of `find_packages(...)`/`find:`).
[ 349s]
[ 349s] You can read more about "package discovery" on setuptools documentation page:
[ 349s]
[ 349s] - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
[ 349s]
[ 349s] If you don't want 'Bio.Entrez.XSDs' to be distributed and are
[ 349s] already explicitly excluding 'Bio.Entrez.XSDs' via
[ 349s] `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
[ 349s] you can try to use `exclude_package_data`, or `include-package-data=False` in
[ 349s] combination with a more fine grained `package-data` configuration.
[ 349s]
[ 349s] You can read more about "package data files" on setuptools documentation page:
[ 349s]
[ 349s] - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[ 349s]
[ 349s]
[ 349s] [^1]: For Python, any directory (with suitable naming) can be imported,
[ 349s] even if it does not contain any `.py` files.
[ 349s] On the other hand, currently there is no concept of package data
[ 349s] directory, all directories are treated like packages.
[ 349s] ********************************************************************************
[ 349s]
[ 349s] !!
[ 349s] check.warn(importable)
[ 349s] copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-312/Bio
[ 349s] copying Bio/py.typed -> build/lib.linux-riscv64-cpython-312/Bio
[ 349s] copying Bio/Align/_aligncore.c -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 349s] copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 349s] copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align
[ 349s] creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
[ 349s] copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
[ 349s] copying Bio/Cluster/cluster.h -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
[ 349s] copying Bio/Cluster/clustermodule.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
[ 349s] creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 349s] copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
[ 350s] creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs
[ 350s] copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs
[ 350s] copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs
[ 350s] copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs
[ 350s] copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-312/Bio/motifs
[ 350s] copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
[ 350s] copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 350s] copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 350s] copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB
[ 350s] copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
[ 350s] copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-312/BioSQL
[ 350s] running build_ext
[ 350s] building 'Bio.Align._codonaligner' extension
[ 350s] creating build/temp.linux-riscv64-cpython-312
[ 350s] creating build/temp.linux-riscv64-cpython-312/Bio
[ 350s] creating build/temp.linux-riscv64-cpython-312/Bio/Align
[ 350s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o
[ 359s] gcc -shared build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-gnu.so
[ 359s] building 'Bio.Align._pairwisealigner' extension
[ 359s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o
[ 434s] gcc -shared build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-gnu.so
[ 436s] building 'Bio.Align._aligncore' extension
[ 436s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_aligncore.o
[ 441s] gcc -shared build/temp.linux-riscv64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.cpython-312-riscv64-linux-gnu.so
[ 441s] building 'Bio.cpairwise2' extension
[ 441s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o
[ 443s] Bio/cpairwise2module.c: In function ‘_get_match_score’:
[ 443s] Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations]
[ 443s] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist)))
[ 443s] | ^~
[ 443s] In file included from /usr/include/python3.12/Python.h:95,
[ 443s] from Bio/cpairwise2module.c:16:
[ 443s] /usr/include/python3.12/ceval.h:27:43: note: declared here
[ 443s] 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords(
[ 443s] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 448s] gcc -shared build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-gnu.so
[ 448s] building 'Bio.Nexus.cnexus' extension
[ 448s] creating build/temp.linux-riscv64-cpython-312/Bio/Nexus
[ 448s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o
[ 452s] gcc -shared build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-gnu.so
[ 453s] building 'Bio.motifs._pwm' extension
[ 453s] creating build/temp.linux-riscv64-cpython-312/Bio/motifs
[ 453s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o
[ 457s] gcc -shared build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-gnu.so
[ 457s] building 'Bio.Cluster._cluster' extension
[ 457s] creating build/temp.linux-riscv64-cpython-312/Bio/Cluster
[ 457s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o
[ 492s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o
[ 503s] gcc -shared build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-gnu.so
[ 504s] building 'Bio.PDB.ccealign' extension
[ 504s] creating build/temp.linux-riscv64-cpython-312/Bio/PDB
[ 504s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o
[ 510s] gcc -shared build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-gnu.so
[ 510s] building 'Bio.PDB.kdtrees' extension
[ 510s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o
[ 519s] gcc -shared build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-gnu.so
[ 519s] building 'Bio.PDB._bcif_helper' extension
[ 519s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.o
[ 523s] gcc -shared build/temp.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-riscv64-linux-gnu.so
[ 523s] building 'Bio.SeqIO._twoBitIO' extension
[ 523s] creating build/temp.linux-riscv64-cpython-312/Bio/SeqIO
[ 523s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o
[ 528s] gcc -shared build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-gnu.so
[ 528s] ++ '[' -f _current_flavor ']'
[ 528s] ++ cat _current_flavor
[ 528s] + last_flavor=python312
[ 528s] + '[' -z python312 ']'
[ 528s] + '[' python312 '!=' python313 ']'
[ 528s] + '[' -d build ']'
[ 528s] + mv build _build.python312
[ 528s] + '[' -d _build.python313 ']'
[ 528s] + echo python313
[ 528s] + python_flavor=python313
[ 528s] + /usr/bin/python3.13 setup.py build '--executable=/usr/bin/python3.13 -s'
[ 530s] running build
[ 530s] running build_py
[ 530s] creating build
[ 530s] creating build/lib.linux-riscv64-cpython-313
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/File.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/LogisticRegression.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/MarkovModel.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/MaxEntropy.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/NaiveBayes.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/kNN.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-313/Bio
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Affy
[ 530s] copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-313/Bio/Affy
[ 530s] copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Affy
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Align/Applications
[ 530s] copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-riscv64-cpython-313/Bio/Align/Applications
[ 530s] copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-riscv64-cpython-313/Bio/Align/Applications
[ 530s] copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-riscv64-cpython-313/Bio/Align/Applications
[ 530s] copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-riscv64-cpython-313/Bio/Align/Applications
[ 530s] copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-riscv64-cpython-313/Bio/Align/Applications
[ 530s] copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-riscv64-cpython-313/Bio/Align/Applications
[ 530s] copying Bio/Align/Applications/_Prank.py -> build/lib.linux-riscv64-cpython-313/Bio/Align/Applications
[ 530s] copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-riscv64-cpython-313/Bio/Align/Applications
[ 530s] copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-riscv64-cpython-313/Bio/Align/Applications
[ 530s] copying Bio/Align/Applications/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Align/Applications
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices
[ 530s] copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/AlignIO
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Alphabet
[ 530s] copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Alphabet
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Application
[ 530s] copying Bio/Application/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Application
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Blast
[ 530s] copying Bio/Blast/Applications.py -> build/lib.linux-riscv64-cpython-313/Bio/Blast
[ 530s] copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-313/Bio/Blast
[ 530s] copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-313/Bio/Blast
[ 530s] copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Blast
[ 530s] copying Bio/Blast/_parser.py -> build/lib.linux-riscv64-cpython-313/Bio/Blast
[ 530s] copying Bio/Blast/_writers.py -> build/lib.linux-riscv64-cpython-313/Bio/Blast
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/CAPS
[ 530s] copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/CAPS
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Cluster
[ 530s] copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Cluster
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/codonalign
[ 530s] copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/codonalign
[ 530s] copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-313/Bio/codonalign
[ 530s] copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-313/Bio/codonalign
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Compass
[ 530s] copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Compass
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Data
[ 530s] copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-313/Bio/Data
[ 530s] copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-313/Bio/Data
[ 530s] copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-313/Bio/Data
[ 530s] copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Data
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Emboss
[ 530s] copying Bio/Emboss/Applications.py -> build/lib.linux-riscv64-cpython-313/Bio/Emboss
[ 530s] copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-313/Bio/Emboss
[ 530s] copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-313/Bio/Emboss
[ 530s] copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Emboss
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Entrez
[ 530s] copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-313/Bio/Entrez
[ 530s] copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Entrez
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/ExPASy
[ 530s] copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-313/Bio/ExPASy
[ 530s] copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-313/Bio/ExPASy
[ 530s] copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-313/Bio/ExPASy
[ 530s] copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-313/Bio/ExPASy
[ 530s] copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/ExPASy
[ 530s] copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-313/Bio/ExPASy
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/GenBank
[ 530s] copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-313/Bio/GenBank
[ 530s] copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-313/Bio/GenBank
[ 530s] copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/GenBank
[ 530s] copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-313/Bio/GenBank
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Geo
[ 530s] copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-313/Bio/Geo
[ 530s] copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Geo
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Graphics
[ 530s] copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics
[ 530s] copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics
[ 530s] copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics
[ 530s] copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics
[ 530s] copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics
[ 530s] copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics
[ 530s] copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Graphics/GenomeDiagram
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/HMM
[ 530s] copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-riscv64-cpython-313/Bio/HMM
[ 530s] copying Bio/HMM/MarkovModel.py -> build/lib.linux-riscv64-cpython-313/Bio/HMM
[ 530s] copying Bio/HMM/Trainer.py -> build/lib.linux-riscv64-cpython-313/Bio/HMM
[ 530s] copying Bio/HMM/Utilities.py -> build/lib.linux-riscv64-cpython-313/Bio/HMM
[ 530s] copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/HMM
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/KEGG
[ 530s] copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-313/Bio/KEGG
[ 530s] copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/KEGG
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/KEGG/Compound
[ 530s] copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/KEGG/Compound
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/KEGG/Enzyme
[ 530s] copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/KEGG/Enzyme
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/KEGG/Gene
[ 530s] copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/KEGG/Gene
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/KEGG/Map
[ 530s] copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/KEGG/Map
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/PDB/mmtf
[ 530s] copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB/mmtf
[ 530s] copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB/mmtf
[ 530s] copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB/mmtf
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/KEGG/KGML
[ 530s] copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-313/Bio/KEGG/KGML
[ 530s] copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-313/Bio/KEGG/KGML
[ 530s] copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/KEGG/KGML
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Medline
[ 530s] copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Medline
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/motifs/applications
[ 530s] copying Bio/motifs/applications/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs/applications
[ 530s] copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs/applications
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/motifs/jaspar
[ 530s] copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs/jaspar
[ 530s] copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-313/Bio/motifs/jaspar
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Nexus
[ 530s] copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-313/Bio/Nexus
[ 530s] copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-313/Bio/Nexus
[ 530s] copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-313/Bio/Nexus
[ 530s] copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-313/Bio/Nexus
[ 530s] copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Nexus
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/NMR
[ 530s] copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-313/Bio/NMR
[ 530s] copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/NMR
[ 530s] copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-313/Bio/NMR
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Pathway
[ 530s] copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Pathway
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Pathway/Rep
[ 530s] copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-313/Bio/Pathway/Rep
[ 530s] copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-313/Bio/Pathway/Rep
[ 530s] copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Pathway/Rep
[ 530s] copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/PDBMLParser.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/alphafold_db.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/binary_cif.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/phenotype
[ 530s] copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/phenotype
[ 530s] copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-313/Bio/phenotype
[ 530s] copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-313/Bio/phenotype
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/PopGen
[ 530s] copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/PopGen
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/PopGen/GenePop
[ 530s] copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-riscv64-cpython-313/Bio/PopGen/GenePop
[ 530s] copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-riscv64-cpython-313/Bio/PopGen/GenePop
[ 530s] copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-313/Bio/PopGen/GenePop
[ 530s] copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-313/Bio/PopGen/GenePop
[ 530s] copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/PopGen/GenePop
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Restriction
[ 530s] copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-313/Bio/Restriction
[ 530s] copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-313/Bio/Restriction
[ 530s] copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-313/Bio/Restriction
[ 530s] copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Restriction
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SCOP
[ 530s] copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-313/Bio/SCOP
[ 530s] copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-313/Bio/SCOP
[ 530s] copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-313/Bio/SCOP
[ 530s] copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-313/Bio/SCOP
[ 530s] copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-313/Bio/SCOP
[ 530s] copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-313/Bio/SCOP
[ 530s] copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SCOP
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SearchIO
[ 530s] copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO
[ 530s] copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO
[ 530s] copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO
[ 530s] copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO
[ 530s] copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SearchIO/_model
[ 530s] copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/_model
[ 530s] copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/_model
[ 530s] copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/_model
[ 530s] copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/_model
[ 530s] copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/_model
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SearchIO/BlastIO
[ 530s] copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/BlastIO
[ 530s] copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/BlastIO
[ 530s] copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/BlastIO
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SearchIO/HHsuiteIO
[ 530s] copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/HHsuiteIO
[ 530s] copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/HHsuiteIO
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SearchIO/HmmerIO
[ 530s] copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/HmmerIO
[ 530s] copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/HmmerIO
[ 530s] copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/HmmerIO
[ 530s] copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/HmmerIO
[ 530s] copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/HmmerIO
[ 530s] copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/HmmerIO
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SearchIO/ExonerateIO
[ 530s] copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/ExonerateIO
[ 530s] copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/ExonerateIO
[ 530s] copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/ExonerateIO
[ 530s] copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/ExonerateIO
[ 530s] copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/ExonerateIO
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SearchIO/InterproscanIO
[ 530s] copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/InterproscanIO
[ 530s] copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-313/Bio/SearchIO/InterproscanIO
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/GfaIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SeqUtils
[ 530s] copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqUtils
[ 530s] copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqUtils
[ 530s] copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqUtils
[ 530s] copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqUtils
[ 530s] copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqUtils
[ 530s] copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqUtils
[ 530s] copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-313/Bio/SeqUtils
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Sequencing
[ 530s] copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-313/Bio/Sequencing
[ 530s] copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-313/Bio/Sequencing
[ 530s] copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Sequencing
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Sequencing/Applications
[ 530s] copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-riscv64-cpython-313/Bio/Sequencing/Applications
[ 530s] copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Sequencing/Applications
[ 530s] copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-riscv64-cpython-313/Bio/Sequencing/Applications
[ 530s] copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-riscv64-cpython-313/Bio/Sequencing/Applications
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SVDSuperimposer
[ 530s] copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SVDSuperimposer
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/SwissProt
[ 530s] copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-313/Bio/SwissProt
[ 530s] copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/SwissProt
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/TogoWS
[ 530s] copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/TogoWS
[ 530s] creating build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 530s] copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 530s] copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 530s] copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 530s] copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo
[ 531s] creating build/lib.linux-riscv64-cpython-313/Bio/Phylo/Applications
[ 531s] copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/Applications
[ 531s] copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/Applications
[ 531s] copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/Applications
[ 531s] copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/Applications
[ 531s] creating build/lib.linux-riscv64-cpython-313/Bio/Phylo/PAML
[ 531s] copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/PAML
[ 531s] copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/PAML
[ 531s] copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/PAML
[ 531s] copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/PAML
[ 531s] copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/PAML
[ 531s] copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/PAML
[ 531s] copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/PAML
[ 531s] copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/PAML
[ 531s] copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-313/Bio/Phylo/PAML
[ 531s] creating build/lib.linux-riscv64-cpython-313/Bio/UniGene
[ 531s] copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/UniGene
[ 531s] creating build/lib.linux-riscv64-cpython-313/Bio/UniProt
[ 531s] copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-313/Bio/UniProt
[ 531s] copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-313/Bio/UniProt
[ 531s] creating build/lib.linux-riscv64-cpython-313/BioSQL
[ 531s] copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-313/BioSQL
[ 531s] copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-313/BioSQL
[ 531s] copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-313/BioSQL
[ 531s] copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-313/BioSQL
[ 531s] copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-313/BioSQL
[ 531s] running egg_info
[ 531s] writing biopython.egg-info/PKG-INFO
[ 531s] writing dependency_links to biopython.egg-info/dependency_links.txt
[ 531s] writing requirements to biopython.egg-info/requires.txt
[ 531s] writing top-level names to biopython.egg-info/top_level.txt
[ 531s] reading manifest file 'biopython.egg-info/SOURCES.txt'
[ 531s] reading manifest template 'MANIFEST.in'
[ 531s] warning: no files found matching '*.fasta' under directory 'Doc'
[ 531s] warning: no files found matching '*.aln' under directory 'Doc/examples'
[ 531s] warning: no files found matching '*.faa' under directory 'Doc/examples'
[ 531s] warning: no files found matching '*.xpk' under directory 'Doc/examples'
[ 531s] warning: no files found matching '*.gbk' under directory 'Doc/examples'
[ 531s] warning: no files found matching '*.sth' under directory 'Doc/examples'
[ 531s] warning: no files found matching '*.bgz' under directory 'Doc/examples'
[ 531s] warning: no files found matching '*.xml' under directory 'Doc/examples'
[ 531s] warning: no files found matching '*.psl' under directory 'Doc/examples'
[ 531s] warning: no files found matching '*.dnd' under directory 'Doc/examples'
[ 531s] warning: no files found matching '*.csv' under directory 'Doc/examples'
[ 531s] warning: no files found matching 'Doc/examples/ls_orchid.gbk.gz'
[ 531s] warning: no files found matching 'Doc/examples/ls_orchid.gbk.bz2'
[ 531s] warning: no files found matching 'Doc/examples/ec_5.4.2.2.txt'
[ 531s] warning: no previously-included files found matching 'Doc/_build/'
[ 531s] warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
[ 531s] warning: no previously-included files matching '*.pyc' found anywhere in distribution
[ 532s] warning: no previously-included files matching '*.pyo' found anywhere in distribution
[ 532s] warning: no previously-included files matching '*.py{}' found anywhere in distribution
[ 532s] warning: no previously-included files matching '*.py-e' found anywhere in distribution
[ 532s] warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
[ 532s] adding license file 'LICENSE'
[ 532s] adding license file 'LICENSE.rst'
[ 532s] writing manifest file 'biopython.egg-info/SOURCES.txt'
[ 532s] /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration.
[ 532s] !!
[ 532s]
[ 532s] ********************************************************************************
[ 532s] ############################
[ 532s] # Package would be ignored #
[ 532s] ############################
[ 532s] Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1],
[ 532s] but it is absent from setuptools' `packages` configuration.
[ 532s]
[ 532s] This leads to an ambiguous overall configuration. If you want to distribute this
[ 532s] package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added
[ 532s] to the `packages` configuration field.
[ 532s]
[ 532s] Alternatively, you can also rely on setuptools' discovery methods
[ 532s] (for example by using `find_namespace_packages(...)`/`find_namespace:`
[ 532s] instead of `find_packages(...)`/`find:`).
[ 532s]
[ 532s] You can read more about "package discovery" on setuptools documentation page:
[ 532s]
[ 532s] - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
[ 532s]
[ 532s] If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are
[ 532s] already explicitly excluding 'Bio.Align.substitution_matrices.data' via
[ 532s] `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
[ 532s] you can try to use `exclude_package_data`, or `include-package-data=False` in
[ 532s] combination with a more fine grained `package-data` configuration.
[ 532s]
[ 532s] You can read more about "package data files" on setuptools documentation page:
[ 532s]
[ 532s] - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[ 532s]
[ 532s]
[ 532s] [^1]: For Python, any directory (with suitable naming) can be imported,
[ 532s] even if it does not contain any `.py` files.
[ 532s] On the other hand, currently there is no concept of package data
[ 532s] directory, all directories are treated like packages.
[ 532s] ********************************************************************************
[ 532s]
[ 532s] !!
[ 532s] check.warn(importable)
[ 532s] /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration.
[ 532s] !!
[ 532s]
[ 532s] ********************************************************************************
[ 532s] ############################
[ 532s] # Package would be ignored #
[ 532s] ############################
[ 532s] Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1],
[ 532s] but it is absent from setuptools' `packages` configuration.
[ 532s]
[ 532s] This leads to an ambiguous overall configuration. If you want to distribute this
[ 532s] package, please make sure that 'Bio.Entrez.DTDs' is explicitly added
[ 532s] to the `packages` configuration field.
[ 532s]
[ 532s] Alternatively, you can also rely on setuptools' discovery methods
[ 532s] (for example by using `find_namespace_packages(...)`/`find_namespace:`
[ 532s] instead of `find_packages(...)`/`find:`).
[ 532s]
[ 532s] You can read more about "package discovery" on setuptools documentation page:
[ 532s]
[ 532s] - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
[ 532s]
[ 532s] If you don't want 'Bio.Entrez.DTDs' to be distributed and are
[ 532s] already explicitly excluding 'Bio.Entrez.DTDs' via
[ 532s] `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
[ 532s] you can try to use `exclude_package_data`, or `include-package-data=False` in
[ 532s] combination with a more fine grained `package-data` configuration.
[ 532s]
[ 532s] You can read more about "package data files" on setuptools documentation page:
[ 532s]
[ 532s] - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[ 532s]
[ 532s]
[ 532s] [^1]: For Python, any directory (with suitable naming) can be imported,
[ 532s] even if it does not contain any `.py` files.
[ 532s] On the other hand, currently there is no concept of package data
[ 532s] directory, all directories are treated like packages.
[ 532s] ********************************************************************************
[ 532s]
[ 532s] !!
[ 532s] check.warn(importable)
[ 532s] /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration.
[ 532s] !!
[ 532s]
[ 532s] ********************************************************************************
[ 532s] ############################
[ 532s] # Package would be ignored #
[ 532s] ############################
[ 532s] Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1],
[ 532s] but it is absent from setuptools' `packages` configuration.
[ 532s]
[ 532s] This leads to an ambiguous overall configuration. If you want to distribute this
[ 532s] package, please make sure that 'Bio.Entrez.XSDs' is explicitly added
[ 532s] to the `packages` configuration field.
[ 532s]
[ 532s] Alternatively, you can also rely on setuptools' discovery methods
[ 532s] (for example by using `find_namespace_packages(...)`/`find_namespace:`
[ 532s] instead of `find_packages(...)`/`find:`).
[ 532s]
[ 532s] You can read more about "package discovery" on setuptools documentation page:
[ 532s]
[ 532s] - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
[ 532s]
[ 532s] If you don't want 'Bio.Entrez.XSDs' to be distributed and are
[ 532s] already explicitly excluding 'Bio.Entrez.XSDs' via
[ 532s] `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
[ 532s] you can try to use `exclude_package_data`, or `include-package-data=False` in
[ 532s] combination with a more fine grained `package-data` configuration.
[ 532s]
[ 532s] You can read more about "package data files" on setuptools documentation page:
[ 532s]
[ 532s] - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[ 532s]
[ 532s]
[ 532s] [^1]: For Python, any directory (with suitable naming) can be imported,
[ 532s] even if it does not contain any `.py` files.
[ 532s] On the other hand, currently there is no concept of package data
[ 532s] directory, all directories are treated like packages.
[ 532s] ********************************************************************************
[ 532s]
[ 532s] !!
[ 532s] check.warn(importable)
[ 532s] copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-313/Bio
[ 532s] copying Bio/py.typed -> build/lib.linux-riscv64-cpython-313/Bio
[ 532s] copying Bio/Align/_aligncore.c -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 532s] copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 532s] copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-313/Bio/Align
[ 532s] creating build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-313/Bio/Align/substitution_matrices/data
[ 532s] copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-313/Bio/Cluster
[ 532s] copying Bio/Cluster/cluster.h -> build/lib.linux-riscv64-cpython-313/Bio/Cluster
[ 532s] copying Bio/Cluster/clustermodule.c -> build/lib.linux-riscv64-cpython-313/Bio/Cluster
[ 532s] creating build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 532s] copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/DTDs
[ 533s] creating build/lib.linux-riscv64-cpython-313/Bio/Entrez/XSDs
[ 533s] copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/XSDs
[ 533s] copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/XSDs
[ 533s] copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-riscv64-cpython-313/Bio/Entrez/XSDs
[ 533s] copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-313/Bio/motifs
[ 533s] copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-313/Bio/Nexus
[ 533s] copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 533s] copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 533s] copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-313/Bio/PDB
[ 533s] copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-313/Bio/SeqIO
[ 533s] copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-313/BioSQL
[ 533s] running build_ext
[ 533s] building 'Bio.Align._codonaligner' extension
[ 533s] creating build/temp.linux-riscv64-cpython-313
[ 533s] creating build/temp.linux-riscv64-cpython-313/Bio
[ 533s] creating build/temp.linux-riscv64-cpython-313/Bio/Align
[ 533s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.13 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-313/Bio/Align/_codonaligner.o
[ 542s] gcc -shared build/temp.linux-riscv64-cpython-313/Bio/Align/_codonaligner.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-313/Bio/Align/_codonaligner.cpython-313-riscv64-linux-gnu.so
[ 543s] building 'Bio.Align._pairwisealigner' extension
[ 543s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.13 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-313/Bio/Align/_pairwisealigner.o
[ 618s] gcc -shared build/temp.linux-riscv64-cpython-313/Bio/Align/_pairwisealigner.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-313/Bio/Align/_pairwisealigner.cpython-313-riscv64-linux-gnu.so
[ 619s] building 'Bio.Align._aligncore' extension
[ 619s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.13 -c Bio/Align/_aligncore.c -o build/temp.linux-riscv64-cpython-313/Bio/Align/_aligncore.o
[ 624s] gcc -shared build/temp.linux-riscv64-cpython-313/Bio/Align/_aligncore.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-313/Bio/Align/_aligncore.cpython-313-riscv64-linux-gnu.so
[ 625s] building 'Bio.cpairwise2' extension
[ 625s] gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -DOPENSSL_LOAD_CONF -fwrapv -fno-semantic-interposition -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -O2 -Wall -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type -g -IVendor/ -fPIC -I/usr/include/python3.13 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-313/Bio/cpairwise2module.o
[ 627s] Bio/cpairwise2module.c: In function ‘_get_match_score’:
[ 627s] Bio/cpairwise2module.c:60:22: error: implicit declaration of function ‘PyEval_CallObject’; did you mean ‘PyObject_CallObject’? [-Wimplicit-function-declaration]
[ 627s] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist)))
[ 627s] | ^~~~~~~~~~~~~~~~~
[ 627s] | PyObject_CallObject
[ 627s] Bio/cpairwise2module.c:60:20: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
[ 627s] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist)))
[ 627s] | ^
[ 627s] error: command '/usr/bin/gcc' failed with exit code 1
[ 627s] error: Bad exit status from /var/tmp/rpm-tmp.oSopmg (%build)
[ 627s]
[ 627s] RPM build errors:
[ 627s] Bad exit status from /var/tmp/rpm-tmp.oSopmg (%build)
[ 628s] ### VM INTERACTION START ###
[ 628s] mount: /: mount point is busy.
[ 628s] dmesg(1) may have more information after failed mount system call.
[ 628s] Warning: 'remount -o ro /' failed. Triple Syncing..
[ 628s] [ 624.088410][ T1] sysrq: Power Off
[ 628s] ### VM INTERACTION END ###
[ 628s]
[ 628s] i02-ch2b failed "build python-biopython.spec" at Sun Aug 10 23:44:49 UTC 2025.
[ 628s]
