File Genepop.changes of Package Genepop

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File Genepop.changes of Package Genepop

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Fri Nov 18 18:16:44 UTC 2016 - aloisio@gmx.com

- Update to version 4.5.1
  * A bug was found and corrected in the Mantel test when 
    performed after a bootstrap (thanks to Thierry de Meeus for 
    spotting discrepancies between Mantel tests).
  4.5:
  * A new keyword inter_all_pairs for setting "popTypeSelection" 
    allows one to perform spatial regressions (but not Mantel 
    tests) between all pairs of individuals or populations 
    belonging to different types (e.g., individuals belonging to 
    different patches, excluding pairwise statistics for pairs 
    of individuals within patches). The inter-OS input file 
    checks have been modfied (again), to address a persistent 
    problem on Mac OS X.
  4.4:
  * Mantel tests are by default no longer based on rank 
    correlation of the distances, but instead on the correlation 
    of the distances. The older rank tests can be performed 
    using the new MantelRankTest setting. In addition, a 
    MaximalDistance setting has been added, affecting the 
    computation of spatial regressions in a way similar to 
    MimimalDistance (but this new setting is best ignored in 
    normal use).
  4.3:
  * New options 8.5 to retain individual names when converting 
    population data to individual data, and 8.6 for generation 
    of haploid genotypes by random sampling in diploid 
    genotypes. Much code tidying to avoid warnings with stricter 
    compilers than vanilla g++..
  4.2.2:
  * Only a cryptic bug fix which won't change any Genepop 
    output, and more changes to comply with the clang compiler 
    stricter syntax checks.
  4.2.1:
  * More cryptic changes in input file checks (again).
  4.2:
  * One can perform all isolation-by-distance analyses with a 
    user-provided distance matrix. Cryptic changes in inter-OS 
    input file checks (again) and in the way locus names are 
    read, which could previously make Genepop crash. 
  4.1.4:
  * Wrong files were included in version 4.1.3. This new release 
    corrects for this.
  4.1.3:
  * This version intended to correct two problems with the 
    IsolationFile option: the source file was not correctly read 
    and (for Windows only) the results when not correctly 
    displayed.
  4.1.2:
  * The Windows executables included in version 4.1.1 were not 
    portable and this is corrected. The genotypic disequilibrium 
    test treated incomplete genotypes as full genotypes and this 
    is corrected.
  4.1.1:
  * Again some cryptic changes in inter-OS input file checks; 
    correction of a crashing bug for a missing-data case in LD 
    testing; but nothing really new in the code. 64-bit 
    executables for Windows. (but see version 4.1.2) The 
    LINKDOS.exe which was missing from the v.4.1 distribution, 
    has been restored.

- Spec cleanup

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Sat Apr 23 01:53:51 UTC 2011 - vimalkumar_v@bioinformatics.org
- Updated to 4.1

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* Sat Apr 23 2011 Vimalkumar Velayudhan <vimalkumar_v@bioinformatics.org> - 4.0-2
- Minor spec file changes

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* Thu Dec 17 2009 -Vimalkumar Velayudhan <vimalkumar_v@bioinformatics.org> - 4.0-1
- Initial package created

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