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UGENE
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File ugene.spec of Package UGENE
# # spec file for package ugene # # Copyright (c) 2024 SUSE LLC # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via https://bugs.opensuse.org/ # Name: ugene Version: 49.1 Release: 0 Summary: Integrated bioinformatics toolkit #The entire source code is GPL-2.0+ except some plugins that are licensed differently License: GPL-2.0-or-later AND LGPL-2.1-or-later AND MIT AND ISC AND BSD-3-Clause AND SUSE-Public-Domain AND SUSE-NonFree Group: Productivity/Scientific/Other URL: http://ugene.net Source0: https://github.com/ugeneunipro/ugene/archive/refs/tags/%{version}.tar.gz#/%{name}-%{version}.tar.gz Source100: %{name}-rpmlintrc BuildRequires: desktop-file-utils BuildRequires: fdupes BuildRequires: glu-devel BuildRequires: hicolor-icon-theme BuildRequires: procps-devel BuildRequires: update-desktop-files BuildRequires: zlib-devel >= 1.2.8 BuildRequires: libqt5-linguist >= 5.15 BuildRequires: libqt5-qtbase-devel >= 5.15 BuildRequires: libqt5-qtscript-devel >= 5.15 BuildRequires: libqt5-qtsvg-devel >= 5.15 BuildRequires: libqt5-qtwebsockets-devel >= 5.15 BuildRequires: libXtst-devel # x86 broken: https://github.com/ugeneunipro/ugene/issues/780 # aarch64 fails due to GLES ExclusiveArch: x86_64 %description Unipro UGENE is a cross-platform visual environment for DNA and protein sequence analysis. UGENE integrates the most important bioinformatics computational algorithms and provides an easy-to-use GUI for performing complex analysis of the genomic data. One of the main features of UGENE is a designer for custom bioinformatics workflows. %prep %autosetup -p1 -N %build %{qmake5} . -r PREFIX=%{_libdir}/ugene %make_jobs # qmake project files are broken, see https://github.com/ugeneunipro/ugene/issues/683 %{qmake5} . -r PREFIX=%{_libdir}/ugene %make_jobs %install %{qmake5_install} # Clean up unnecessary files find %{buildroot}/%{_libdir} -iname lib\*.a -ls -delete rm %{buildroot}/%{_libdir}/ugene/*.xpm rm %{buildroot}/%{_libdir}/ugene/ugene for dir in %{_datadir}/applications %{_mandir}/man1 %{_bindir} \ %{_datadir}/icons/hicolor/32x32/mimetypes \ %{_datadir}/icons/hicolor/48x48/apps \ %{_datadir}/mime/packages do mkdir -p %{buildroot}${dir} done mv %{buildroot}/%{_libdir}/ugene/*desktop %{buildroot}%{_datadir}/applications/ mv %{buildroot}/%{_libdir}/ugene/*.1.* %{buildroot}%{_mandir}/man1/ mv %{buildroot}/%{_libdir}/ugene/application*.png %{buildroot}%{_datadir}/icons/hicolor/32x32/mimetypes/ mv %{buildroot}/%{_libdir}/ugene/ugene*.png %{buildroot}%{_datadir}/icons/hicolor/48x48/apps/ mv %{buildroot}/%{_libdir}/ugene/application*.xml %{buildroot}%{_datadir}/mime/packages/ for f in ugenem ugeneui ugenecl ; do ln -s %{_libdir}/ugene/$f %{buildroot}/%{_bindir}/$f done %suse_update_desktop_file -r %{name} "Qt Science Chemistry" sed -i -e '/Exec/ s/ugene -ui/ugeneui/' %{buildroot}%{_datadir}/applications/*desktop find %{buildroot}%{_libdir}/ugene/data -type f -exec chmod -x '{}' \; %fdupes %{buildroot} %files %license LICENSE.txt LICENSE.3rd_party.txt %{_bindir}/* %{_libdir}/%{name} %{_datadir}/applications/* %{_datadir}/icons/hicolor/*/apps/*.png %{_datadir}/icons/hicolor/*/mimetypes/*.png %{_datadir}/mime/packages/* %{_mandir}/man1/* %changelog
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