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File muscle.spec of Package muscle
# # spec file for package muscle # # Copyright (c) 2012 SUSE LINUX Products GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via http://bugs.opensuse.org/ # Name: muscle Summary: Multiple Alignment Program License: SUSE-Public-Domain Group: Productivity/Scientific/Other Version: 3.8.31 Release: 0 BuildRequires: gcc-c++ BuildRequires: make Source: %{name}%{version}_src.tar.gz Patch: muscle-disable-static.patch BuildRoot: %{_tmppath}/%{name}-%{version}-build Url: http://www.drive5.com/muscle %description MUSCLE is a program for creating multiple alignments of amino acid or nucleotide sequences. A range of options is provided that give you the choice of optimizing accuracy, speed, or some compromise between the two. Default parameters are those that give the best average accuracy in our tests. Using versions current at the time of writing, my tests show that MUSCLE can achieve both better average accuracy and better speed than CLUSTALW or T‑Coffee, depending on the chosen options. Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97. %prep %setup -c %patch -p0 %build export CXXFLAGS="$RPM_OPT_FLAGS" cd %{name}%{version}/src make %install rm -rf %{buildroot} mkdir -p %{buildroot}/%{_bindir} install -m 755 %{name}%{version}/src/muscle %{buildroot}/%{_bindir}/muscle %clean %files %defattr(-,root,root) %{_bindir}/muscle %changelog
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