File petsc.spec of Package petsc
#
# spec file for package petsc
#
# Copyright (c) 2025 SUSE LLC
# Copyright (c) 2025 Atri B. <badshah400@opensuse.org>
# Copyright (c) 2024 Andreas Stieger <Andreas.Stieger@gmx.de>
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
# Please submit bugfixes or comments via https://bugs.opensuse.org/
#
%global flavor @BUILD_FLAVOR@%{nil}
# Please also update slepc, which is version locked with petsc
%define pname petsc
%define so_ver 3_23
ExcludeArch: s390 s390x
# Fails to link during configure, as it omits SuperLU from the link libraries
%bcond_with hypre
# Only available as openmpi flavor, and not in Factory
%bcond_with pastix
%if "%flavor" == ""
ExclusiveArch: do_not_build
%endif
%if "%flavor" == "serial"
%endif
%if "%flavor" == "openmpi4"
%define mpi_flavor openmpi4
%endif
%if "%flavor" == "openmpi5"
%define mpi_flavor openmpi5
ExcludeArch: %{ix86} %{arm}
%endif
%if 0%{?mpi_flavor:1}
%bcond_without mpi
%define mpi_suffix -%{mpi_flavor}
%else
%bcond_with mpi
%endif
%define package_name %{pname}%{?mpi_suffix}
%define libname lib%{pname}%{so_ver}%{?mpi_suffix}
%if %{without mpi}
%define p_prefix %{_prefix}/
%else
%define p_prefix %{_libdir}/mpi/gcc/%{mpi_flavor}/
%endif
%define p_libdir %{p_prefix}%_lib
%define p_include %{p_prefix}include
%define petsc_arch %_arch
Name: %{package_name}
Summary: Portable Extensible Toolkit for Scientific Computation
License: BSD-2-Clause
Group: Development/Libraries/C and C++
Version: 3.23.0
Release: 0
URL: https://www.mcs.anl.gov/petsc/
Source: https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-%{version}.tar.gz
Patch0: Remove-rpath-test.patch
Patch1: petsc-3.7-fix-pastix-detection.patch
Patch2: Allow-lib64-as-library-directory-for-scalapack.patch
Patch3: petsc-fix-libdir.patch
BuildRequires: bison
BuildRequires: blas-devel
BuildRequires: fdupes
BuildRequires: gcc-c++
BuildRequires: gcc-fortran
BuildRequires: hdf5%{?mpi_suffix}-devel
BuildRequires: hwloc-devel
BuildRequires: lapack-devel
BuildRequires: pkg-config
BuildRequires: python3-base
BuildRequires: suitesparse-devel >= 5.6.0
BuildRequires: xz
BuildRequires: pkgconfig(valgrind)
BuildRequires: pkgconfig(yaml-0.1)
BuildRequires: pkgconfig(zlib)
%if %{with hypre}
BuildRequires: hypre%{?mpi_suffix}-devel
BuildRequires: superlu-devel
%endif
%if %{with mpi}
BuildRequires: %{mpi_flavor}-devel
BuildRequires: %{mpi_flavor}-macros-devel
BuildRequires: blacs-%{mpi_flavor}-devel
BuildRequires: ptscotch-%{mpi_flavor}-devel
BuildRequires: ptscotch-parmetis-%{mpi_flavor}-devel
BuildRequires: scalapack-%{mpi_flavor}-devel
%if %{with pastix}
BuildRequires: pastix-%{mpi_flavor}-devel
%endif
%else
BuildRequires: metis-devel
%endif
%description
PETSc is a suite of data structures and routines for the scalable
(parallel) solution of scientific applications modeled by partial
differential equations.
%package -n %{libname}
Summary: PETSc shared libraries
Group: System/Libraries
# Fixup wrong package name
Conflicts: libpetsc3%{?mpi_suffix}
%description -n %{libname}
PETSc is a suite of data structures and routines for the scalable
(parallel) solution of scientific applications modeled by partial
differential equations.
%package %{?n_pre}devel
Summary: Devel files for petsc
Group: Development/Libraries/C and C++
Requires: %{libname} = %{version}
Requires: hdf5%{?mpi_suffix}-devel
Requires: suitesparse-devel
Requires: pkgconfig(yaml-0.1)
%if %{with hypre}
Requires: hypre%{?mpi_suffix}-devel
Requires: superlu-devel
%endif
%if %{without mpi}
Requires: metis-devel
%else
Requires: blacs-%{mpi_flavor}-devel
Requires: ptscotch-%{mpi_flavor}-devel
Requires: ptscotch-parmetis-%{mpi_flavor}-devel
Requires: scalapack-%{mpi_flavor}-devel
%endif
%description %{?n_pre}devel
PETSc is a suite of data structures and routines for the scalable
(parallel) solution of scientific applications modeled by partial
differential equations.
%package doc
Summary: Documentation for petsc
Group: Documentation/HTML
%description doc
This package contains the documentation for petsc.
%prep
%setup -q -n petsc-%{version}
%autopatch -p1
# Fix broken MAKEFLAGS usage
sed -i -e 's/MAKEFLAGS="[^"]*"//' lib/petsc/conf/rules
# Fix shebangs in packaged scripts
find src lib config share -type f -iname \*.py -exec sed -i \
-e '1 s@#!.*env python3@#!/usr/bin/python3@' \
-e '1 s@#!.*env python@#!/usr/bin/python%{python3_version}@' \
\{\} \;
find lib/petsc/bin -type f -exec sed -i \
-e '1 s@#!.*env sh@#!/usr/bin/sh@' \
-e '1 s@#!.*env python3@#!/usr/bin/python3@' \
-e '1 s@#!.*env python@#!/usr/bin/python%{python3_version}@' \
\{\} \;
# Add missing hashbangs for py scripts
sed -E -i '1{s@^@#!%{_bindir}/python%{python3_version}\n@}' \
lib/petsc/bin/PetscBinaryIO*.py \
lib/petsc/bin/petsc_conf.py
# Delete hashbang from non-exec script
sed -E -i '1{\@#!.*@d}' share/petsc/bin/dmnetwork_view.py
sed -E -i 's/\r$//' src/tao/leastsquares/tutorials/tomographyGenerateData.m
%build
export PETSC_DIR=${RPM_BUILD_DIR}/petsc-%{version}
export PETSC_LIB_DIR=%{p_libdir}
export PETSC_ARCH=%petsc_arch
%{?with_mpi:%setup_openmpi}
%ifarch ppc64le ppc64 s390 aarch64 x86_64
export ARCHCFLAGS=-fPIC
%endif
%{_bindir}/python%{python3_version} ./configure \
--COPTFLAGS="$RPM_OPT_FLAGS $ARCHCFLAGS" \
--FOPTLAGS="$RPM_OPT_FLAGS $ARCHCFLAGS" \
--CXXOPTFLAGS="$RPM_OPT_FLAGS $ARCHCFLAGS" \
--prefix=%{p_prefix} \
--with-batch=0 \
--with-clanguage=C++ \
--with-c-support \
--with-fortran-interfaces=1 \
--with-debugging=no \
--with-hdf5=1 \
--with-python-exec=%{_bindir}/python%{python3_version} \
--with-shared-libraries \
--with-suitesparse=1 \
--with-yaml=1 \
%if %{with hypre}
--with-hypre=1 \
--with-superlu=1 \
%endif
%if %{without mpi}
--with-mpi=0 \
%else
--with-mpi=1 \
--with-blacs=1 \
--with-pastix=%{?with_pastix:1}%{!?with_pastix:0} \
--with-ptscotch=1 \
--with-scalapack=1 \
%endif
|| { cat configure.log; exit 1; }
%make_build
%install
export PETSC_DIR=${RPM_BUILD_DIR}/petsc-%{version}
export PETSC_LIB_DIR=%{p_libdir}
export PETSC_ARCH=%{petsc_arch}
%make_install
find %{buildroot}%{p_prefix}/share/petsc/examples/src -type f -ipath '*/output/*out' -delete
rm -f %{buildroot}%{p_libdir}/conf/*.log
rm -f %{buildroot}%{p_libdir}/conf/.DIR
rm -rf %{buildroot}%{p_libdir}/conf/*.init
rm -rf %{buildroot}%{p_libdir}/conf/*.py
rm -rf %{buildroot}%{p_libdir}/conf/modules
# clean up non-include files
find %{buildroot}%{p_include} -name \*.html -exec rm {} \;
find %{buildroot}%{p_include} -name makefile -exec rm {} \;
sed -i \
-e 's!^\(#define PETSC_LIB_DIR\).*$!\1 "'%{p_libdir}'"!' \
-e 's!^\(#define PETSC_DIR\).*$!\1 "'%{p_prefix}'"!' \
%{buildroot}%{p_include}/petscconf.h
# remove buildroot
find %{buildroot}%{p_libdir}/{conf,bin}/ -type f -print0 | \
while IFS= read -r -d $'\0' line ; do
if file -e soft $line | grep -q "text" ; then
sed -i -e 's!%{buildroot}!!g' $line
fi
done
for i in $(find %{buildroot}%{p_prefix}/share \( -perm /a+x -and -type f \) ) ; do
grep -m 1 -q "^#!" $i || chmod a-x $i
done
chmod a+x %{buildroot}%{p_libdir}/petsc/bin/{configureTAS,extract,tasClasses}.py
# Remove CPU count from petscvariables, https://gitlab.com/petsc/petsc/-/issues/1315
sed -i -e '/^MAKE_/ { /MAKE_NP/ d ; /MAKE_LOAD/ d ; /MAKE_TEST_NP/ d }; /^NPMAX/ d' \
%{buildroot}%{p_libdir}/petsc/conf/petscvariables
%fdupes %{buildroot}%{p_include}
%fdupes %{buildroot}%{p_libdir}
%fdupes %{buildroot}%{p_prefix}/share/petsc/examples
%check
%if %{with mpi}
%setup_openmpi
%endif
export LD_LIBRARY_PATH+=:%{buildroot}%{p_libdir}
%make_build check
%ldconfig_scriptlets -n %{libname}
%files -n %{libname}
%{p_libdir}/*.so.*
%{p_prefix}/share/petsc/
%exclude %{p_prefix}/share/petsc/examples
%exclude %{p_prefix}/share/petsc/saws
%files %{?n_pre}devel
%exclude %{p_libdir}/petsc/bin/saws
%{p_include}/*.mod
%{p_include}/petsc/
%{p_include}/petsc*.h*
%{p_libdir}/*.so
%{p_libdir}/petsc/
%if %{with mpi}
%dir %{p_libdir}/pkgconfig
%endif
%{p_libdir}/pkgconfig/*.pc
%doc %{p_prefix}/share/petsc/examples
%changelog
