File Genepop.changes of Package Genepop
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Fri Nov 18 18:16:44 UTC 2016 - aloisio@gmx.com
- Update to version 4.5.1
* A bug was found and corrected in the Mantel test when
performed after a bootstrap (thanks to Thierry de Meeus for
spotting discrepancies between Mantel tests).
4.5:
* A new keyword inter_all_pairs for setting "popTypeSelection"
allows one to perform spatial regressions (but not Mantel
tests) between all pairs of individuals or populations
belonging to different types (e.g., individuals belonging to
different patches, excluding pairwise statistics for pairs
of individuals within patches). The inter-OS input file
checks have been modfied (again), to address a persistent
problem on Mac OS X.
4.4:
* Mantel tests are by default no longer based on rank
correlation of the distances, but instead on the correlation
of the distances. The older rank tests can be performed
using the new MantelRankTest setting. In addition, a
MaximalDistance setting has been added, affecting the
computation of spatial regressions in a way similar to
MimimalDistance (but this new setting is best ignored in
normal use).
4.3:
* New options 8.5 to retain individual names when converting
population data to individual data, and 8.6 for generation
of haploid genotypes by random sampling in diploid
genotypes. Much code tidying to avoid warnings with stricter
compilers than vanilla g++..
4.2.2:
* Only a cryptic bug fix which won't change any Genepop
output, and more changes to comply with the clang compiler
stricter syntax checks.
4.2.1:
* More cryptic changes in input file checks (again).
4.2:
* One can perform all isolation-by-distance analyses with a
user-provided distance matrix. Cryptic changes in inter-OS
input file checks (again) and in the way locus names are
read, which could previously make Genepop crash.
4.1.4:
* Wrong files were included in version 4.1.3. This new release
corrects for this.
4.1.3:
* This version intended to correct two problems with the
IsolationFile option: the source file was not correctly read
and (for Windows only) the results when not correctly
displayed.
4.1.2:
* The Windows executables included in version 4.1.1 were not
portable and this is corrected. The genotypic disequilibrium
test treated incomplete genotypes as full genotypes and this
is corrected.
4.1.1:
* Again some cryptic changes in inter-OS input file checks;
correction of a crashing bug for a missing-data case in LD
testing; but nothing really new in the code. 64-bit
executables for Windows. (but see version 4.1.2) The
LINKDOS.exe which was missing from the v.4.1 distribution,
has been restored.
- Spec cleanup
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Sat Apr 23 01:53:51 UTC 2011 - vimalkumar_v@bioinformatics.org
- Updated to 4.1
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* Sat Apr 23 2011 Vimalkumar Velayudhan <vimalkumar_v@bioinformatics.org> - 4.0-2
- Minor spec file changes
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* Thu Dec 17 2009 -Vimalkumar Velayudhan <vimalkumar_v@bioinformatics.org> - 4.0-1
- Initial package created
