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File HMMER.spec of Package HMMER (Revision 8dd6740c87acefeb4c2b568fca7df0c8)

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#
# spec file for package HMMER
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# norootforbuild

%define emhome %{_datadir}/EMBOSS

Name:           HMMER
Version:        2.3.2
Release:        1
Summary:        This is the EMBOSS integrated version of HMMER
Group:          Productivity/Scientific/Other
License:        GPLv2+
URL:            http://www.emboss.org/

Source0:        %{name}-%{version}.tar.gz

BuildRequires: EMBOSS-devel
BuildRequires: gd-devel
BuildRequires: postgresql-devel
BuildRequires: libharu-devel
BuildRequires: libmysqlclient-devel
BuildRequires: fdupes
BuildRequires: xorg-x11-libX11-devel
BuildRequires: xorg-x11-devel
BuildRequires: libexpat-devel
BuildRequires: zlib-devel
BuildRequires: pcre-devel
BuildRequires: pam-devel

%if 0%{?suse_version} > 1120
BuildRequires: libpng14-devel libpng14-14 libfreetype6
%else
BuildRequires: libpng-devel libpng
%endif

Requires: EMBOSS

BuildRoot:      %{_tmppath}/%{name}-%{version}-build

%description
EMBOSS is a free Open Source software analysis package specially
developed for the needs of the molecular biology (e.g. EMBnet) user community.
The software automatically copes with data in a variety of formats and even
allows transparent retrieval of sequence data from the web. Also, as extensive
libraries are provided with the package, it is a platform to allow other
scientists to develop and release software in true open source spirit.
EMBOSS also integrates a range of currently available packages and tools for
sequence analysis into a seamless whole.

Reference for EMBOSS: Rice,P. Longden,I. and Bleasby,A.
"EMBOSS: The European Molecular Biology Open Software Suite"
Trends in Genetics June 2000, vol 16, No 6. pp.276-277

%package docs
Summary:        Documentation for %{name}
Group:          Documentation/Other

%description docs
The %{name}-docs package includes the documentation for %{name}.

%prep
%setup -q

%build

%configure \
  --disable-static \
  --with-x \
  --with-auth \
  --with-thread \
  --includedir=%{_includedir}/EMBOSS \
  --enable-systemlibs \
%ifarch ppc64 sparc64 x86_64
  --enable-64 \
%endif

C_INCLUDE_PATH=/usr/include/EMBOSS/epcre:/usr/include/EMBOSS/:/usr/include/EMBOSS/eplplot/
export C_INCLUDE_PATH

%{__make} %{?_smp_mflags}

%install

rm -rf %{buildroot}

%{__make} install DESTDIR=%{buildroot}

#move doc to /usr/share/doc/packages/EMBOSS/programs
mkdir -p %{buildroot}%{_datadir}/doc/packages/EMBOSS/programs
mv %{buildroot}%{_datadir}/EMBOSS/doc/html %{buildroot}%{_datadir}/doc/packages/EMBOSS/programs
mv %{buildroot}%{_datadir}/EMBOSS/doc/programs/text %{buildroot}%{_datadir}/doc/packages/EMBOSS/programs
rm -rf %{buildroot}%{_datadir}/EMBOSS/doc

%fdupes %{buildroot}

%clean
rm -rf %{buildroot}

%files
%defattr(-,root,root,-)
%{_bindir}/*
%{_datadir}/EMBOSS

%files docs
%defattr(-,root,root,-)
%{_datadir}/doc/packages/EMBOSS

%changelog
* Tue Jul 10 2012 Tobias Schwarz <mail@tobias-schwarz.net> - 2.3.2-1
- First rpm package

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File HMMER.spec of Package HMMER (Revision 8dd6740c87acefeb4c2b568fca7df0c8)

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