File python-arviz.changes of Package python-arviz
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Sun Oct 6 10:24:01 UTC 2024 - Ben Greiner <code@bnavigator.de>
- Update to 0.20.0
##New features
* Add optimized simultaneous ECDF confidence bands (2368)
* Add support for setting groups with idata[group] (2374)
## Maintenance and fixes
* Make dm-tree and optional dependency (2379)
* Fix bug in psislw modifying input inplace (2377)
* Fix behaviour of two dimensional KDE plot with recent
matplotlib releases (2383)
* Make defaults in plot_compare more intuitive (2388)
## Documentation
* Added extensions of virtual environments in .gitignore (2371)
* Fixed the issue in the Contribution References Documentation
(2369)
* Improve docstrings for loo and waic (2366)
- Release 0.19.0
## New Features
* Use revised Pareto k threshold (2349)
* Added arguments ci_prob, eval_points, rvs, and random_state to
plot_ecdf (2316)
* Deprecated rcParam stats.hdi_prob and replaced with
stats.ci_prob (2316)
* Expose features from arviz-base, arviz-stats and arviz-plots as
arviz.preview submodule (2361)
## Maintenance and fixes
* Ensure support with numpy 2.0 (2321)
* Update testing strategy to include an environment without
optional dependencies and an environment with scientific python
nightlies (2321)
* Address bokeh related deprecations (2362)
* Fix legend overwriting issue in plot_trace (2334)
## Deprecation
* Support for arrays and DataArrays in plot_khat has been
deprecated. Only ELPDdata will be supported in the future
(2349)
* Removed arguments values2, fpr, pointwise, and pit in plot_ecdf
(2316)
- Update test setup
* Disable numba test due to missing compatibility with numpy 2.1
* Remove old bokeh test skips
* Add netCDF4 to tests
* Run in parallel with pytest-xdist
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Thu Jul 11 02:36:53 UTC 2024 - Steve Kowalik <steven.kowalik@suse.com>
- Update to 0.18.0:
* New features
+ Add new example data rugby_field and update rugby example data
+ Support for pytrees and robust to nested dictionaries.
+ Add .close method to InferenceData
* Maintenance and fixes
+ Fix deprecation warnings in multiple dependencies
* Deprecation
+ Removed arguments values2, fpr, pointwise, npoints, and pit in
plot_ecdf
- Restrict numpy to < 2.
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Mon Mar 18 10:43:07 UTC 2024 - Dirk Müller <dmueller@suse.com>
- update to 0.17.1:
* Fix deprecations introduced in latest pandas and xarray
versions, and prepare for numpy 2.0 ones (2315))
* Refactor ECDF code
* Fix `plot_forest` when Numba is installed
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Sat Mar 2 09:37:41 UTC 2024 - Ben Greiner <code@bnavigator.de>
- Skip python39: no xarray anymore
- Build PEP517 wheel
- Skip a failing bokeh test
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Sat Jan 20 12:48:28 UTC 2024 - Dirk Müller <dmueller@suse.com>
- update to 0.17.0:
* Add prior sensitivity diagnostic `psens`
* Add filter_vars functionality to
`InfereceData.to_dataframe`method
* Update requirements: matplotlib>=3.5, pandas>=1.4.0,
numpy>=1.22.0
* Fix behaviour of `plot_ppc` when dimension order isn't
`chain, draw, ...`
* Avoid repeating the variable name in `plot_ppc`,
`plot_bpv`, `plot_loo_pit`... when repeated.
* Add support for the latest CmdStanPy.
* Fix import error on windows due to missing encoding
argument
* Add ``__delitem__`` method to InferenceData
* Improve the docstring of `psislw`
* Rerun the quickstart and working with InferenceData notebooks
* Several fixes in `plot_ppc` docstring
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Wed Jul 26 16:05:34 UTC 2023 - Dirk Müller <dmueller@suse.com>
- update to 0.16.1:
* Fix Numba deprecation errors and incorrect nopython usage
* Rerun Numba notebook
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Sun Jul 16 11:01:01 UTC 2023 - Dirk Müller <dmueller@suse.com>
- update to 0.16.0:
* Add InferenceData<->DataTree conversion functions (2253)
* Bayes Factor plot: Use arviz's kde instead of the one from
scipy (2237)
* InferenceData objects can now be appended to existing netCDF4
files and to specific groups within them (2227)
* Added facade functions `az.to_zarr` and `az.from_zarr` (2236)
* Replace deprecated np.product with np.prod (2249)
* Fix numba deprecation warning (2246)
* Fixes for creating numpy object array (2233 and 2239)
* Adapt histograms generated by plot_dist to input dtype (2247)
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Fri Jun 2 02:44:16 UTC 2023 - Steve Kowalik <steven.kowalik@suse.com>
- No longer skip Python 3.8 and 3.11.
- Add missing BuildRequires on dask-array.
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Wed Mar 22 08:21:10 UTC 2023 - Daniel Garcia <daniel.garcia@suse.com>
- skip python 3.11 and python 3.8 because some dependencies doesn't
support that python versions
- Update to 0.15.1
- Fix memory usage and improve efficiency in `from_emcee`
([2215](https://github.com/arviz-devs/arviz/pull/2215))
- Lower pandas version needed
([2217](https://github.com/arviz-devs/arviz/pull/2217))
- 0.15.0
- Adds Savage-Dickey density ratio plot for Bayes factor
approximation.
([2037](https://github.com/arviz-devs/arviz/pull/2037),
[2152](https://github.com/arviz-devs/arviz/pull/2152))
- Add `CmdStanPySamplingWrapper` and `PyMCSamplingWrapper` classes
([2158](https://github.com/arviz-devs/arviz/pull/2158))
- Changed dependency on netcdf4-python to h5netcdf
([2122](https://github.com/arviz-devs/arviz/pull/2122))
- Fix `reloo` outdated usage of `ELPDData`
([2158](https://github.com/arviz-devs/arviz/pull/2158))
- plot_bpv smooth discrete data only when computing u_values
([2179](https://github.com/arviz-devs/arviz/pull/2179))
- Fix bug when beanmachine objects lack some fields
([2154](https://github.com/arviz-devs/arviz/pull/2154))
- Fix gap for `plot_trace` with option `kind="rank_bars"`
([2180](https://github.com/arviz-devs/arviz/pull/2180))
- Fix `plot_lm` unsupported usage of `np.tile`
([2186](https://github.com/arviz-devs/arviz/pull/2186))
- Update `_z_scale` to work with SciPy 1.10
([2186](https://github.com/arviz-devs/arviz/pull/2186))
- Fix bug in BaseLabeller when combining with with NoVarLabeller
([2200](https://github.com/arviz-devs/arviz/pull/2200))
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Thu Nov 24 10:03:01 UTC 2022 - Daniel Garcia <daniel.garcia@suse.com>
- Update to 0.14.0
* Add weight_predictions function to allow generation of weighted predictions
from two or more InfereceData with posterior_predictive groups and a set of
weights (2147)
* Add Savage-Dickey density ratio plot for Bayes factor approximation. (2037,
[2152](#2152)
* Adds rug plot for observed variables to plot_ppc. (2161)
* Fix dimension ordering for plot_trace with divergences (2151)
- v0.13.0 (2022 Oct 22)
* Add side argument to plot_violin to allow single-sided violin plots (1996)
* Added support for Bean Machine via the function from_beanmachine. (2107
* Add support for warmup samples in from_pystan for PyStan 3. (2132
* Add exception in az.plot_hdi for x of type np.datetime64 and smooth=True
(2016)
* Change ax.plot usage to ax.scatter in plot_pair (1990)
* Example data has been moved to the arviz_example_data repository and is now
included using git subtree. (2096 and 2105)
* Bokeh kde contour plots started to use contourpy package (2104)
* Update default Bokeh markers for rcparams (2104)
* Correctly (re)order dimensions for bfmi and plot_energy (2126)
* Fix bug with the dimension order dependency (2103)
* Add testing module for labeller classes (2095)
* Skip compression for object dtype while creating a netcdf file (2129)
* Fix issue in dim generation when default dims are present in user inputed
dims (2138)
* Save InferenceData level attrs to netcdf and zarr (2131)
* Update tests and docs for updated example data (2137)
* Copy coords before modifying in ppcplot (2160)
* Removed fill_last, contour and plot_kwargs arguments from plot_pair
function (2085)
* Add translation overview to contributing guide (2041)
* Improve how to release page (2144)
- v0.12.1 (2022 May 12)
* Add stat_focus argument to arviz.summary (1998)
* psislw now smooths log-weights even when shape is lower than 1/3(2011)
* Fixes from_cmdstanpy, handles parameter vectors of length 1 (2023)
* Fix typo in BaseLabeller that broke NoVarLabeller (2018)
* Adding plotting guides (2025)
* Update links to use new domain (2013)
- v0.12.0 (2022 Mar 23)
* Add new convenience function arviz.extract_dataset (1725)
* Add combine_dims argument to several functions (1676)
* [experimental] Enable dask chunking information to be passed to
InferenceData.from_netcdf with regex support (1749)
* Allow kwargs to customize appearance of the mean in plot_lm
* Add dict option to from_cmdstan log_likelihood parameter (as in
from_pystan)
* Unify model comparison API. Both plot_compare, plot_elpd can now take dicts
of InferenceData or ELPDData (1690)
* Change default for rcParam stats.ic_pointwise to True (1690)
* Add new plot type: plot_ecdf (1753)
* Drop Python 3.6 support (1430)
* Bokeh 3 compatibility. (1919)
* Remove manual setting of 2d KDE limits (1939)
* Pin to bokeh<3 version (1954)
* Fix legend labels in plot_ppc to reflect prior or posterior. (1967)
* Change DataFrame.append to pandas.concat (1973)
* Fix axis sharing behaviour in plot_pair. (1985)
* Fix parameter duplication problem with PyStan (1962)
* Temporarily disable pyjags tests (1963)
* Fix tuple bug in coords (1695)
* Fix extend 'right' join bug (1718)
* Update attribute handling for InferenceData (1357)
* Fix R2 implementation (1666)
* Added warning message in plot_dist_comparison() in case subplots go over
the limit (1688)
* Fix coord value ignoring for default dims (2001)
* Fixed plot_posterior with boolean data (1707)
* Fix min_ess usage in plot_ess (2002)
* Fixed typo in Forestplot documentation
* Restructured contributing section and added several new pages to help
contributing to docs (1903)
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Sat Mar 5 16:19:27 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 0.11.4:
* Fix standard deviation code in density utils
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Thu Jan 14 14:27:57 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
- Initial package.
