File python-hyperspy.spec of Package python-hyperspy

#
# spec file for package python-hyperspy
#
# Copyright (c) 2023 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via https://bugs.opensuse.org/
#


Name:           python-hyperspy
Version:        1.7.3
Release:        0
Summary:        Multidimensional data analysis toolbox
License:        GPL-3.0-only
URL:            https://hyperspy.org
Source0:        https://github.com/hyperspy/hyperspy/archive/v%{version}.tar.gz#/hyperspy-%{version}.tar.gz
# Create with scipy >= 1.10 and pooch: `python3 -c "import scipy; scipy.datasets.download_all('scipy-datasets/scipy-data')"; tar czf scipy-datasets.tar.gz scipy-datasets`
Source1:        scipy-datasets.tar.gz
# PATCH-FIX-UPSTREAM hyperspy-e2d6483-scipy-datasets-fix.patch https://github.com/hyperspy/hyperspy/commit/e2d6483975d4d3e9f12f1fef077d9efbd125524d
Patch1:         hyperspy-e2d6483-scipy-datasets-fix.patch
BuildRequires:  %{python_module Cython}
BuildRequires:  %{python_module devel >= 3.7}
BuildRequires:  %{python_module pip}
BuildRequires:  %{python_module setuptools}
BuildRequires:  %{python_module wheel}
BuildRequires:  fdupes
BuildRequires:  python-rpm-macros
Requires:       python-Jinja2
Requires:       python-Pint >= 0.10
Requires:       python-PyYAML
Requires:       python-dask-array > 2.11.0
Requires:       python-dask-diagnostics > 2.11.0
Requires:       python-dill
Requires:       python-fsspec
Requires:       python-h5py >= 2.3
Requires:       python-imageio
Requires:       python-importlib_metadata >= 3.6
Requires:       python-ipyparallel
Requires:       python-matplotlib >= 3.1.3
Requires:       python-natsort
Requires:       python-numba >= 0.52
Requires:       python-numexpr
Requires:       python-numpy >= 1.17.1
Requires:       python-packaging
Requires:       python-prettytable
Requires:       python-python-dateutil >= 2.5.0
Requires:       python-requests
Requires:       python-scikit-image >= 0.15
Requires:       python-scipy >= 1.1
Requires:       python-sparse
Requires:       python-sympy
Requires:       python-tifffile >= 2020.2.16
Requires:       python-toolz
Requires:       python-tqdm >= 4.9.0
Requires:       python-traits >= 4.5.0
Requires:       python-zarr >= 2.9.0
Requires:       (python-ipython with (python-ipython < 8.0 or python-ipython >= 8.1))
Recommends:     python-hyperspy_gui_ipywidgets
Recommends:     python-hyperspy_gui_traitsui
# This package does not support 32 bit arch.
ExcludeArch:    %{ix86} %{arm}
# SECTION test
BuildRequires:  %{python_module pooch}
BuildRequires:  %{python_module pytest-instafail}
BuildRequires:  %{python_module pytest-mpl}
BuildRequires:  %{python_module pytest-rerunfailures}
BuildRequires:  %{python_module pytest-xdist}
BuildRequires:  %{python_module pytest}
BuildRequires:  %{python_module scipy >= 1.10.0}
# runtime
BuildRequires:  %{python_module Jinja2}
BuildRequires:  %{python_module Pint >= 0.10}
BuildRequires:  %{python_module PyYAML}
BuildRequires:  %{python_module dask-array > 2.11.0}
BuildRequires:  %{python_module dask-diagnostics >= 2.11.0}
BuildRequires:  %{python_module dill}
BuildRequires:  %{python_module fsspec}
BuildRequires:  %{python_module h5py >= 2.3}
BuildRequires:  %{python_module imageio}
BuildRequires:  %{python_module importlib_metadata >= 3.6}
BuildRequires:  %{python_module ipyparallel}
BuildRequires:  %{python_module matplotlib >= 3.1.3}
BuildRequires:  %{python_module natsort}
BuildRequires:  %{python_module numba >= 0.52}
BuildRequires:  %{python_module numexpr}
BuildRequires:  %{python_module numpy >= 1.17.1}
BuildRequires:  %{python_module packaging}
BuildRequires:  %{python_module prettytable}
BuildRequires:  %{python_module python-dateutil >= 2.5.0}
BuildRequires:  %{python_module requests}
BuildRequires:  %{python_module scikit-image >= 0.15}
BuildRequires:  %{python_module sparse}
BuildRequires:  %{python_module sympy}
BuildRequires:  %{python_module tifffile >= 2020.2.16}
BuildRequires:  %{python_module toolz}
BuildRequires:  %{python_module tqdm >= 4.9.0}
BuildRequires:  %{python_module traits >= 4.5.0}
BuildRequires:  %{python_module zarr >= 2.9.0}
BuildRequires:  %{python_module ipython with (%python-ipython < 8.0 or %python-ipython >= 8.1)}
# /SECTION
%python_subpackages

%description
HyperSpy is an open source Python library which provides tools to facilitate
the interactive data analysis of multidimensional datasets that can be
described as multidimensional arrays of a given signal (e.g. a 2D array of
spectra a.k.a spectrum image).

%prep
%autosetup -p1 -n hyperspy-%{version} -a1
# Remove non linux file
rm release_windows.bat
chmod -x hyperspy/tests/io/bruker_data/*.spx

%build
%pyproject_wheel

%install
%pyproject_install
%python_expand %fdupes %{buildroot}%{$python_sitearch}

%check
# pooch cache (extracted SOURCE1)
export XDG_CACHE_HOME=$PWD/scipy-datasets
# flaky
donttest="(test_1D_tools and test_align1D)"
# flaky crashes on obs
donttest="$donttest or (TestROIs and test_lazy_spanroi_getitem)"
%pytest_arch -k "not ($donttest)"

%files %{python_files}
%doc README.rst
%license COPYING.txt
%{python_sitearch}/hyperspy-%{version}.dist-info
%{python_sitearch}/hyperspy

%changelog