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File bwa.spec of Package bwa (Revision 99ca49103717abeb9e3661ecef559118)

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#
# spec file for package bwa
#
# Copyright (c) 2021 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via https://bugs.opensuse.org/
#

Name:           bwa
Version:        0.7.17
Release:        0
Summary:        Burrow-Wheeler Aligner for short-read alignment
License:        GPL-3.0-or-later
Group:          Productivity/Scientific/Other
URL:            http://bio-bwa.sourceforge.net/
Source:         https://github.com/lh3/bwa/archive/refs/tags/v%{version}.tar.gz#/bwa-%{version}.tar.gz
# Fixing compilation using modern GCC
Patch0:         bwa.diff
BuildRequires:  gcc
BuildRequires:  zlib-devel
Requires:       perl

%description
BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to a few megabases. BWA-MEM and BWA-SW share similar features such as the support of long reads and chimeric alignment, but BWA-MEM, which is the latest, is generally recommended as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.

%prep
%setup -q
%patch0

%build
%make_build

%install
mkdir -p %{buildroot}/%{_bindir}
cp bwa %{buildroot}/%{_bindir}
cp *.pl %{buildroot}/%{_bindir}
perlbin=$(which perl)
sed -i "s:/usr/bin/env perl:${perlbin}:" %{buildroot}/%{_bindir}/*.pl

%files
%license COPYING
%{_bindir}/*

%changelog

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File bwa.spec of Package bwa (Revision 99ca49103717abeb9e3661ecef559118)

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