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File petsc.changes of Package petsc (Revision 2affb1f41427d0c51c9ac6e76b92cb78)

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Wed Feb 16 15:39:12 UTC 2022 - Egbert Eich <eich@suse.com>

- Fix HPC module settings (bsc#1195782).
- Remove dependency on librt for libsuitparse to make the non-HPC
  build on Factory again.

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Wed Mar 24 09:50:05 UTC 2021 - Egbert Eich <eich@suse.com>

- Update to version 3.14.5.
  * Documentation & man page fixes, removal of non-existing functions.
  * CPARDISO: stick to OpenMPI BLACS when needed
  * bugfix for MatMatMultSymbolic_MPIAIJ_MPIDense() when Bbn1 = 0.
    Bb (column block size) zero lead to infinite loop in
    MatMatMultNumeric_MPIAIJ_MPIDense() with n=0.
  * petscviewer: fix the fortran bindings of XXXViewFromOptions
    when called with obj=PETSC_NULL_XXX.
  * PetscOptionsPrefixPush: Accept numbers if the stack is not
    empty.
  * PetscOptionsClearValue: Also clear 'help_intro' slot.
  * PetscOptionsDestroyDefault: Fix possible NULL-dereference.
  * PetscOptionsUsed: Fix for case-insensitive string comparison.
  * Do not use MPI_Bcast() on a single rank - This allows direct
    reading  of much larger files, in, for example, MatLoad_SeqAIJ_Binary.
  * PCHPDDM: fix for KSPLSQR.
  * DMPlexVTKWriteAll_VTU: numerous bugfixes.
  * MatBAIJ: FIx specialization for size 9.

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Wed Feb 24 16:27:54 UTC 2021 - Christian Goll <cgoll@suse.com>

- Updated to version 3.14.4 (jsc#SLE-14959)
  * versionToTuple: ignore leading strings in package versions.
      i.e 5.3.3consortium -> 5.3.3
  * Add error checks for integer overflow for
    MatSeqXAIJSetPreallocation when the user provides nnz[].
    Otherwise PetscMalloc() can produce error messages with requests to
    absurds amount of memory.
    Improve the error message for PetscIntMultError() and other casting
    routines and add more seealso entries to the manual pages.
  * Update dmlocalts.c to prevent zeroing out of locX_t after being computed
    in TSComputeIJacobian_DMLocal.
  * nargs.Arg: Remove interactiveness; provide useful error when key is not
    found.
  * DMPlexLandau: fix implicit conversion.
  * Allow users to mistaken use openmpi or mpich when setting mpi or mpi-dir
    and consistently use local variable 'name'
  * Consume -help in PetscOptionsSetValue() so it can be set from RC file etc.
  * Enable search patterns to have 'src*' at start.
  * Fix Matlab int32 to match changed changes in PETSc data types.
  * Generate error instead of crashing when estimating eigenvalues for
    Chebyshev, no right hand side vector is available and the user requested
    to not use a noisy right hand side.
  * Fix pcmgsetlevels() for Fortran to properly convert the C MPI communictors
    to Fortran.
  * Fix PCMGSetLevels_MG() to support the use of MPI_COMM_NULL for
    communicators that that live on a subset of the orginal communicator.
  *  Add additional documentation material to PCMGSetLevels() explaining how
     one must handle the restriction and interpolation operations that move
     between different levels which have a different number of MPI ranks.
  * Call PetscCUDAInitializeCheck() in
    MatConvert_SeqAIJ_SeqAIJCUSPARSE since it uses cuSparse().
  * Missing this sometimes produces errors in the CU tests, but other times
    it passes. I don't understand why it is not needed.
  * checkbadSource now prints line numbers of where it finds problems.
  * Add support to Fortran interface for PCASMGetSubKSP() and PCGASMGetSubKSP()
    to use PETSC_NULL_INT for first two arguments.
  * Missing define in landaucu.cu.
  * Fix for PCView_BJacobi() case when neither if case is statisfied.
  * DMCreateInterpolation() requires a custom Fortran stub because it RETURNS
    an optional vector.
  * Add -da_refine to manual page for DMDASetRefinementFactor().
  * AIJMKL: cannot print a scalar in case of complex.
  * Fix memory leaks in TSTrajectoryCreate_Memory() and possibly bugs
  * Don't generate an error if the user does not free all objects while using
    SuperLU_DIST.
  * -ksp_view -ksp_type gmres -pc_type gasm fails on one process. Fixed by
    removing special case handling of size 1 that tried to reuse
    orginal viewer as subviewer which does not work.
  * Add KSPGMRESSetBreakdownTolerance() and -ksp_gmres_breakdown_tolerance
    - to restore old GMRES behaviour for MOOSE.
  * Fix bug introduced by PCASMSetSubMatType() when MAT_REUSE_MATRIX is
    used with a different type of pmat compared to pmat[i].
  * Always destroy previously created pmat[i] and use   MAT_INITIAL_MATRIX
  * Clarify integers set with to ISCreateBlock() and ISBlockSetIndices() in
    manual pages.
  * Remove ierr = VecSetInf(ksp->vec_sol);CHKERRQ(ierr); from
    KSPSetUp_Chebyshev() since ksp->vec_sol may not yet exist and it is not
    needed since VecSetInf(ksp->vec_sol) is set in KSPSolve() just before
    the actual solve if ksp->reason = KSP_DIVERGED_PC_FAILED.
  * Remove mention of DMDAGetLocalInfoF90() since it does not exist, Fortran
    version has same name as C version.
  * MATSHELL: matrix sizes may not be known at creation time.
  * Pass PetscDrawSetSave() and PetscDrawSetSaveFinalImage() to
    PetscViewerGetSubViewer_Draw(). Otherwise MatView() on parallel matrices,
    for example, will not generate an image file.
  * config MPI: fix type of self.libdir (which is passed to os.path.join).
  * MUMPS: add -DBLR_MT when configuring --with-openmp.
  * missing PDIPM and typo in BQNLS for fortran imports.
  * Fixed issue where scalapack matrix is created with a communicator different
    from MPI_COMM_WORLD.
  * Fix PetscErrorCode typos in Fortran stubs.
  * Remove interface declarations for functions that don't exist.
  * SNESMultiblock: add back into build (had been missing -  still untested).
  * MATDAAD: remove vestigial references to deleted DAAD.
  * Fix device atomics with 64-bit indices and prefer long long over int64_t
  * petsc4py.py: set download-petsc4py-commit to None to overcome missing key
    error.
  * petsc4py: Update Cython build
      * Set `language_level` to `3str` if supported (Cython >= 0.29)
      * Initial preparations for upcoming release Cython 3.0
      * Require Cython >= 0.24, older versions do not longer work
  * Improve python-related entries in configure --help.
      * add missing --download-petsc4py option.
      * remove python options other than --with-python-exec
        which have no effect.
      * move --with-python-exec to PETSc section.
  * PetscPythonFindLibrary: One more way to get pythonlib.
    Hotfix for case when LDLIBRARY yields libpython<version>.a
    erroneously.
  * SLEPc: pass PYTHONPATH for slepc4py.
  * Add manual page for MATMPIDENSE.
  * Fix outdated mention of "-snes_ksp_ew_conv" in users manual.
  * Improve manual pages for MatGetValuesLocal() and MatGetValues() to clarify
    what values may be obtained with these routines.
  * Add to manual pages the use of call XXXView(x,0) from the debugger.
  * KSPGCR: add man pages for setting and getting restart.
  * Put the docs for -snes_test_jacobian in SNESSetFromOptions() instead of
    hidden away in developer routine.
  * Improve clarity of docs for PETSC_VIEWER_SOCKET with Matlab.
- Refactored patches:
  * petsc-3.3-p2-no-rpath.patch
  * petsc-3.7-fix-pastix-detection.patch

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Fri Feb  5 20:18:20 UTC 2021 - Egbert Eich <eich@suse.com>

- Add build support for gcc10 to HPC build (bsc#1174439).
- Add openmpi4 flavors.

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Thu Jan 28 18:30:29 UTC 2021 - Egbert Eich <eich@suse.com>

- Change 'Requires:' to other HPC packages to %requires_eq to depend
  on the exact version. This should take care of HPC packages ignoring
  proper ABI versioning.

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Thu Nov  5 16:52:47 UTC 2020 - Ana Guerrero Lopez <aguerrero@suse.com>

- Update to version 3.14.1
  * https://www.mcs.anl.gov/petsc/documentation/changes/314.html
- Refresh patches

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Tue Jun 23 12:43:57 UTC 2020 - Egbert Eich <eich@suse.com>

- Make sure, doc package is built for SLE (bsc#1173269).

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Wed Jan  8 15:40:51 UTC 2020 - Stefan Brüns <stefan.bruens@rwth-aachen.de>

- Force use of python3 on Tumbleweed. As the python2 executable was
  also set in petsc's configuration, dependent packages no longer
  depend on python2.
- Fix she-bangs in python scripts
- Only require python{2,3}-base packages instead of full packages.

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Wed Dec 11 17:31:03 UTC 2019 - Egbert Eich <eich@suse.com>

- Remove unneeded dependency from HPC devel package.

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Tue Dec  3 08:31:20 UTC 2019 - Egbert Eich <eich@suse.com>

- Update to version 3.12.2 (jsc#SLE-8505)
  * https://www.mcs.anl.gov/petsc/documentation/changes/312.html
- Remove petsc-3.3-p2-fix-shared-libs-sonames.patch
  link created directly in %install section
- Remove petsc-3.3-p2-dont-check-for-option-mistakes.patch
  not needed.
- Remove petsc-3.3-fix-error-detection-in-makefile.patch
  not needed.
- Add non-HPC build with openmpi3
- Add HPC builds for gcc8 & gcc 9 (jsc#SLE-7766 & jsc#SLE-8604).
- Disable openmpi1 builds for SLE/Leap > 15.1.
- Enable openmpi3 builds for Leap and SLE > 15.1 (jsc#SLE-7773).

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Wed Nov 27 16:38:25 UTC 2019 - Stefan Brüns <stefan.bruens@rwth-aachen.de>

- Reflect renaming of openmpi packages to openmpi1 in Tumbleweed,
  fixes unresolvable packages.
- Fix copy'n'paste error, mpi_vers vs. mpi_ver
- Add non-HPC openmpi2 flavor.

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Wed Aug 21 08:20:23 UTC 2019 - Ana Guerrero Lopez <aguerrero@suse.com>

- Update to version 3.11.3 (jsc#SLE-8505)
  - https://www.mcs.anl.gov/petsc/documentation/changes/311.html
  - Binaries have changed path from bin/ to lib/petsc/bin/
- Patches removed, merged by upstream
  * Python-Fix-a-number-of-scripts-to-by-Python-3-compliant.patch
  * petsc-fix-nonmpi.patch
- Patches refreshed
  * petsc-3.3-p2-fix-shared-libs-sonames.patch
  * petsc-3.3-p2-no-rpath.patch
  * petsc-3.3-p2-dont-check-for-option-mistakes.patch
  * petsc-3.3-fix-error-detection-in-makefile.patch
  * petsc-3.7-fix-pastix-detection.patch
- Set -fPIC also on x86_64

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Fri Jul 19 16:15:44 UTC 2019 - Egbert Eich <eich@suse.com>

- Upped memory constraints to 6G for non-ppc systems as well,
  leaving the special ppc treatment in place in case we need to up it
  some more there.

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Wed Jul 17 06:07:56 UTC 2019 - Michel Normand <normand@linux.vnet.ibm.com>

- update _constraints for PowerPC more than 4G memory
- Add BuildRequires libopenblas-gnu-hpc >=  0.3.6 for hpc to  avoid
  to build when openblas library not available.

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Tue Mar 26 15:29:56 UTC 2019 - Stefan Brüns <stefan.bruens@rwth-aachen.de>

- Disable pastix also in openmpi flavor, same as for serial and HPC flavors.
  Pastix is only built with openmpi, and not available in Factory.

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Wed Mar 20 18:15:58 UTC 2019 - Stefan Brüns <stefan.bruens@rwth-aachen.de>

- Fix building non-MPI flavors of packages depending on petsc
  Add petsc-fix-nonmpi.patch
- Do not move headers to /usr/include and symlink, causes problems with
  -isystem

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Wed Mar 13 23:34:19 UTC 2019 - Stefan Brüns <stefan.bruens@rwth-aachen.de>

- Fix spec for non-HPC, reenable serial and non-HPC openmpi build.
- Disable HYPRE for non-HPC, same as for HPC.

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Wed Feb 13 11:40:48 UTC 2019 - Egbert Eich <eich@suse.com>

- Consolidate use of openmpi1, openmpi2, openmpi3.
- Do not build non-HPC on SLE.

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Mon Apr 30 18:10:21 UTC 2018 - eich@suse.com

- (Temporarily) disable fpr S390* as a check test for netcdf fails
  currently on BE (bsc#1091474).

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Fri Apr 27 12:53:49 UTC 2018 - guillaume.gardet@opensuse.org

- Add _constraints to avoid OOM errors

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Tue Apr 17 12:55:59 UTC 2018 - eich@suse.com

- Do not require 'Modules' for HPC build: seetings from 
  /etc/profile.d/lmod.[c]sh will be overwritten by
  /etc/profile.d/modules.[c]sh installed by Modules
  (bsc#1089865).

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Sun Apr  1 19:12:40 UTC 2018 - eich@suse.com

- Convert doc package build to noarch. This will hopefully avoid
  spurious build errors on SLE-12.

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Tue Mar 27 16:29:59 UTC 2018 - stefan.bruens@rwth-aachen.de

- Set '-fPIC' also on aarch64

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Tue Mar 27 10:34:46 UTC 2018 - eich@suse.com

- Reenable flavor 'serial' to build the doc package only
  (bsc#1087050).
  Note: for this flavor nothing else gets built: once the
  missing dependencies have been fixed, rearrange the 
  #%if 0%{?makedoc:1} ... %endif.

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Tue Mar 20 13:54:00 CET 2018 - ro@suse.de

- use "-fPIC" also on s390, like on ppc64 (bsc#1086008)

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Fri Mar  9 12:30:57 UTC 2018 - eich@suse.com

- Don't build the serial flavor as the build presently breaks
  everywhere (bsc#1084677).

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Sun Mar  4 09:11:32 UTC 2018 - eich@suse.com

- Python-Fix-a-number-of-scripts-to-by-Python-3-compliant.patch:
  Fix python scripts - convert to Python 3 (bsc#1082209).
- Restructure package: factor out SAWs stuff. We cannot
  support this as SAWs itself isn't available for SUSE.
- Move python files that are not stand-alone out of the
  bin directory.
- Fix permissions in bin and other directories.
- Removed some unwanted scripts:
  rules - make rules
  sendToJenkins - this should probably be modified to print an error message
  uncrustify.cfg - used by 'rules'
- Removed win32fe: DLLs for Windows
- Set '-fPIC' on ppc64.

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Thu Feb 22 13:56:02 UTC 2018 - eich@suse.com

- Update to version 3.8.3:
  http://www.mcs.anl.gov/petsc/documentation/changes/37.html
  (FATE#325333).

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Fri Feb  9 20:14:15 UTC 2018 - eich@suse.com

- Since the OpenBLAS build was fixed, reenable scalapack
  on s390 (bsc#1079513).
- Add support for openmpi2 for HPC (FATE#325089).
- Fix build on ppc64le (bsc#1080380).

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Fri Feb  9 15:00:10 UTC 2018 - cgoll@suse.com

- Fix summary in module files (bnc#1080259)

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Tue Feb  6 09:18:55 UTC 2018 - eich@suse.com

- Don't use baselibs.conf: some dependencies are not available for
  i586 on Factory.

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Tue Feb  6 09:13:14 UTC 2018 - eich@suse.com

- The HPC build of petsc depends on openBLAS. OpenBLAS doesn't
  support s390: skip building on s390 (bsc#1079513).

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Mon Jan 29 15:22:04 UTC 2018 - eich@suse.com

- Fix build with rpm v4.14.

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Fri Jan 12 15:49:16 UTC 2018 - eich@suse.com

- Disable the openmpi3 flavor in some products.

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Fri Jan  5 19:15:30 UTC 2018 - eich@suse.com

- Switch from gcc6 to gcc7 as additional compiler flavor for HPC on SLES.
- Fix library package requires - use HPC macro (boo#1074890).
- Add support for mpich and openmpi3 for HPC.
- Fix unexpanded rpm macro in environment module file for HPC (boo#1074897).

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Tue Nov 14 11:40:02 UTC 2017 - eich@suse.com

- emvironment modules: only set BIN when binary path exists.
- Fix RPM macro name %hpc_upcase.

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Fri Nov 10 17:02:52 UTC 2017 - eich@suse.com

- Add libhdf5/libscalapack*-hpc as Requires to the library package 
  for HPC.

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Thu Nov  2 19:28:46 UTC 2017 - eich@suse.com

- Simplify Group: - do not destinguish between MPI
  and non-MPI: the IBS check scripts cannot handle
  this well.

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Mon Oct 30 23:55:37 UTC 2017 - eich@suse.com

- Fix Requires for HPC build.

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Sun Oct 22 19:29:23 UTC 2017 - eich@suse.com

- Disable non-HPC openmpi flavor due to missing dependencies.

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Fri Sep  8 19:13:36 UTC 2017 - eich@suse.com

- Convert to multibuild.
- Add HPC build using environment modules
  (FATE#321718).
- Generate baselib.conf dynamically and only for the non-HPC
  builds: this avoids issues with the source validator.
- Updated to 3.7.6 (in sync with OpenHPC)
  Changelog at: http://www.mcs.anl.gov/petsc/documentation/changes/37.html

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Thu Mar  9 15:40:18 UTC 2017 - kkhere.geo@gmail.com

- recreate petsc package with version 3.7.5
  previously existing petsc package was deleted for unknown reasons.
  package in science repository is just a broken link.
  previous changelog salvaged from installed rpm is below.
- upstream version changelogs available at
  https://www.mcs.anl.gov/petsc/petsc-as/documentation/changes/index.html

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Mon Sep 28 15:44:21 UTC 2015 - kkhere.geo@gmail.com

- Refix blacs dependency, since blacs is now merged in scalapack

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Tue Jul 28 10:41:48 UTC 2015 - toddrme2178@gmail.com

- Fix blacs dependency ambiguity

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Wed Jul 15 09:21:49 UTC 2015 - toddrme2178@gmail.com

- Fix building on ppc64 and ppc64le

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Sat Apr  5 16:04:56 UTC 2014 - scorot@free.fr

- update files list of mvapich2 package and then fix build on SLE

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Thu Jan  9 14:27:31 UTC 2014 - kkhere.geo@gmail.com

- update to version 3.4.3
  * changelog at
    http://www.mcs.anl.gov/research/projects/petsc/petsc-as/documentation/changes/34.html
- modified patches:
  * petsc-3.3-fix-error-detection-in-makefile.patch
  * petsc-3.3-p2-dont-check-for-option-mistakes.patch
  * petsc-3.3-p2-fix-shared-libs-sonames.patch
  * petsc-3.3-p2-no-rpath.patch
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Wed May 22 20:11:36 UTC 2013 - scorot@free.fr

- update ot latest patch level p7
  * No changelog available for a patch level upgrade

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Sun Feb 24 14:59:13 UTC 2013 - scorot@free.fr

- updated to patch level p6
  * No changelog available for a patch level upgrade

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Mon Feb  4 20:28:03 UTC 2013 - scorot@free.fr

- updated to patch level p5
  * No changelog available for a patch level upgrade

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Mon Sep 17 21:27:12 UTC 2012 - scorot@free.fr

- fix module file for parallel version

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Sun Sep 16 20:30:11 UTC 2012 - scorot@free.fr

- add modules files
- add version number in the petsc directory to allow multiple
  versions to be installed at the same time
- update to patch level p3

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Sun Sep  2 10:47:04 UTC 2012 - scorot@free.fr

- add suitesparce-devel in the requirements list of devel packages

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Thu Aug 30 21:18:42 UTC 2012 - scorot@free.fr

- add requirments in devel packages
- fix license

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Thu Aug 23 19:07:07 UTC 2012 - scorot@free.fr

- enable umfpack and cholmod
- enable blacs and scalapack for parallel version

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Sat Aug 11 10:56:14 UTC 2012 - scorot@free.fr

- fix typo in spec file making install failure on x86_64

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Sat Aug 11 10:18:29 UTC 2012 - scorot@free.fr

- add missing %%_petsc_arch to %%_prefix path

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Sat Aug 11 09:49:39 UTC 2012 - scorot@free.fr

- add PETSC_ARCH in the subdirectory path

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Thu Aug  9 13:42:04 UTC 2012 - scorot@free.fr

- add symlink petsc_dir/include to %%_includedir

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Sat Aug  4 20:35:26 UTC 2012 - scorot@free.fr

- version 3.3
  * see http://www.mcs.anl.gov/petsc/documentation/changes/33.html
    for a list of changes

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Fri Aug  3 20:27:15 UTC 2012 - scorot@free.fr

- mvapich2 build for SLE 11
- update baselibs.conf

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Tue Jul 31 20:46:24 UTC 2012 - scorot@free.fr

- compress source tarball with xz

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Tue Jul 31 17:26:00 UTC 2012 - scorot@free.fr

- enable hypre support for openmpi build

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Fri Jul 27 20:54:50 UTC 2012 - scorot@free.fr

- enable fortran interface and c++ support

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Thu Jul 26 22:10:50 UTC 2012 - scorot@free.fr

- fix library dirs in petsc conf files

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Thu Jul 26 21:30:35 UTC 2012 - scorot@free.fr

- put all petsc file in a dedicated dir

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Tue Jul 24 22:27:11 UTC 2012 - scorot@free.fr

- add openmpi package
- fix libs dependencies

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Thu Jun  7 18:27:19 UTC 2012 - scorot@free.fr

- add baselibs.conf

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Sat May 19 15:14:53 UTC 2012 - scorot@free.fr

- first package base on spec file from Fabrice Bellet for fedora

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