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insighttoolkit
dcmtk-cmake.patch
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File dcmtk-cmake.patch of Package insighttoolkit
diff -ruN InsightToolkit-4.13.2.orig/Modules/ThirdParty/DCMTK/CMake/FindDCMTK.cmake InsightToolkit-4.13.2/Modules/ThirdParty/DCMTK/CMake/FindDCMTK.cmake --- InsightToolkit-4.13.2.orig/Modules/ThirdParty/DCMTK/CMake/FindDCMTK.cmake 1970-01-01 02:00:00.000000000 +0200 +++ InsightToolkit-4.13.2/Modules/ThirdParty/DCMTK/CMake/FindDCMTK.cmake 2015-11-12 18:21:07.000000000 +0200 @@ -0,0 +1,350 @@ +# - find DCMTK libraries and applications +# The module defines the following variables: +# +# DCMTK_INCLUDE_DIRS - Directories to include to use DCMTK +# DCMTK_LIBRARIES - Files to link against to use DCMTK +# DCMTK_FOUND - If false, don't try to use DCMTK +# DCMTK_DIR - (optional) Source directory for DCMTK +# +# DCMTK_DIR can be used to make it simpler to find the various include +# directories and compiled libraries if you've just compiled it in the +# source tree. Just set it to the root of the tree where you extracted +# the source (default to /usr) +# +# +# This file is able to find version of DCMTK that do or do not export +# a DCMTKConfig.cmake file. +# +# IMPORTANT: A set of patches has been contributed to DCMTK +# maintainers, as soon as: +# (1) it has been integrated upstream so that it is available in +# an official release (for example X.Y.Z), +# (2) code bases have been updated to build against X.Y.Z +# This file could be removed. +# +# The set of patches is listed here: https://github.com/commontk/DCMTK/compare/79030ba...f461865 +# +# +# Waiting for this to happen, build systems will have to be able +# to support different versions of DCMTK. +# +# On any given system, the following combination of DCMTK version could be +# considered: +# +# | SYSTEM DCMTK + LOCAL DCMTK | Supported ? | +# --------------------------------------------------------------------------- +# Case A | NA + [ ] DCMTKConfig | YES | +# ------------------------------------------------------|-------------------- +# Case B | NA + [X] DCMTKConfig | YES | +# ------------------------------------------------------|-------------------- +# Case C | [ ] DCMTKConfig + NA | YES | +# ------------------------------------------------------|-------------------- +# Case D | [X] DCMTKConfig + NA | YES | +# ------------------------------------------------------|-------------------- +# Case E | [ ] DCMTKConfig + [ ] DCMTKConfig | YES (*) | +# ------------------------------------------------------|-------------------- +# Case F | [X] DCMTKConfig + [ ] DCMTKConfig | NO | +# ------------------------------------------------------|-------------------- +# Case G | [ ] DCMTKConfig + [X] DCMTKConfig | YES | +# ------------------------------------------------------|-------------------- +# Case H | [X] DCMTKConfig + [X] DCMTKConfig | YES | +# --------------------------------------------------------------------------- +# +# (*) See Troubleshooting section. +# +# Legend: +# +# NA ...............: Means that no System or Local DCMTK is available +# +# [ ] DCMTKConfig ..: Means that the version of DCMTK does NOT export a DCMTKConfig.cmake file. +# +# [X] DCMTKConfig ..: Means that the version of DCMTK exports a DCMTKConfig.cmake file. +# +# +# +# In CTK commits 52d953 and 74b4b07, the FindDCMTK.cmake module has been updated to be able +# to find both version of DCMTK ([ ] DCMTKConfig and [X] DCMTKConfig). +# +# It is a two steps process: +# +# * Step 1: Attempt to find DCMTK version providing a DCMTKConfig.cmake file. This is done +# with the help of '' +# +# * Step 2: If step 1 failed, rely on FindDCMTK.cmake to set DCMTK_* variables details below. +# +# +# +# Troubleshooting: +# +# What to do if my project find a different version of DCMTK ? +# +# Remove DCMTK entry from the CMake registry. +# Search for "CMake user package registry" on http://www.cmake.org/cmake/help/v2.8.9/cmake.html#command:find_package +# +# Details: As some point, the DCMTK build tree was exported [1][2][3]. Indeed, before the set of +# patches discussed above has been contributed to upstream DCMTK, an initial implementation of +# a DCMTK build system exporting its build tree has been implemented and has been tested by some +# folks. This had the effect of populating the CMake registry. +# +# Since Step1 does not exclude the CMake registry, when dealing with case E, the incorrect version of +# DCMTK could be found. +# +# [1] http://slicer-devel.65872.n3.nabble.com/Packaging-seems-to-work-again-tp4028121p4028134.html +# [2] https://www.assembla.com/spaces/slicerrt/tickets/244-dcmtk_dir-vs--dcmtkconfig-cmake?comment=267984263#comment:267984263 +# [3] http://www.cmake.org/cmake/help/v2.8.11/cmake.html#command:export +# +# +#============================================================================= +# Copyright 2004-2009 Kitware, Inc. +# Copyright 2009-2010 Mathieu Malaterre <mathieu.malaterre@gmail.com> +# Copyright 2010 Thomas Sondergaard <ts@medical-insight.com> +# +# Distributed under the OSI-approved BSD License (the "License"); +# see accompanying file Copyright.txt for details. +# +# This software is distributed WITHOUT ANY WARRANTY; without even the +# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. +# See the License for more information. +#============================================================================= +# (To distributed this file outside of CMake, substitute the full +# License text for the above reference.) + +# +# Written for VXL by Amitha Perera. +# Upgraded for GDCM by Mathieu Malaterre. +# Modified for EasyViz by Thomas Sondergaard. +# + +set(_dcmtk_dir_description "The directory of DCMTK build or install tree.") + +# Ensure that DCMTK_DIR is set to a reasonable default value +# so that DCMTK libraries can be found on a standard Unix distribution. +# It also overwrite the value of DCMTK_DIR after this one has been +# set by a successful discovery of DCMTK by the unpatched FindDCMTK.cmake module +# distributed with CMake (as of 0167cea) +if(NOT DCMTK_DIR OR DCMTK_DIR STREQUAL "/usr/include/dcmtk") + set(DCMTK_DIR "/usr" CACHE PATH ${_dcmtk_dir_description} FORCE) +endif() + +set(_SAVED_DCMTK_DIR ${DCMTK_DIR}) + +# +# Step1: Attempt to find a version of DCMTK providing a DCMTKConfig.cmake file. +# +message(STATUS "Trying to find DCMTK expecting DCMTKConfig.cmake") +find_package(DCMTK QUIET NO_MODULE) +if(DCMTK_FOUND + AND NOT "x" STREQUAL "x${DCMTK_LIBRARIES}" + AND NOT "x" STREQUAL "x${DCMTK_INCLUDE_DIRS}") + message(STATUS "Trying to find DCMTK expecting DCMTKConfig.cmake - ok") + return() +else() + message(STATUS "Trying to find DCMTK expecting DCMTKConfig.cmake - failed") +endif() + +message(STATUS "Trying to find DCMTK relying on FindDCMTK.cmake") + +# Restore the value reset by the previous call to 'find_package(DCMTK QUIET NO_MODULE)' +set(DCMTK_DIR ${_SAVED_DCMTK_DIR} CACHE PATH ${_dcmtk_dir_description} FORCE) + + +# +# Step2: Attempt to find a version of DCMTK that does NOT provide a DCMTKConfig.cmake file. +# + +# prefer DCMTK_DIR over default system paths like /usr/lib +if(DCMTK_DIR) + set(CMAKE_PREFIX_PATH ${DCMTK_DIR}/lib ${CMAKE_PREFIX_PATH}) # this is given to FIND_LIBRARY or FIND_PATH +endif() + +# Find all libraries, store debug and release separately +foreach(lib + dcmpstat + dcmsr + dcmsign + dcmtls + dcmqrdb + dcmnet + dcmjpeg + dcmimage + dcmimgle + dcmdata + oflog + ofstd + ijg12 + ijg16 + ijg8 + ) + + # Find Release libraries + find_library(DCMTK_${lib}_LIBRARY_RELEASE + ${lib} + PATHS + ${DCMTK_DIR}/${lib}/libsrc + ${DCMTK_DIR}/${lib}/libsrc/Release + ${DCMTK_DIR}/${lib}/Release + ${DCMTK_DIR}/lib + ${DCMTK_DIR}/lib/Release + ${DCMTK_DIR}/dcmjpeg/lib${lib}/Release + NO_DEFAULT_PATH + ) + + # Find Debug libraries + find_library(DCMTK_${lib}_LIBRARY_DEBUG + ${lib} + PATHS + ${DCMTK_DIR}/${lib}/libsrc + ${DCMTK_DIR}/${lib}/libsrc/Debug + ${DCMTK_DIR}/${lib}/Debug + ${DCMTK_DIR}/lib + ${DCMTK_DIR}/lib/Debug + ${DCMTK_DIR}/dcmjpeg/lib${lib}/Debug + NO_DEFAULT_PATH + ) + + mark_as_advanced(DCMTK_${lib}_LIBRARY_RELEASE) + mark_as_advanced(DCMTK_${lib}_LIBRARY_DEBUG) + + # Add libraries to variable according to build type + if(DCMTK_${lib}_LIBRARY_RELEASE) + list(APPEND DCMTK_LIBRARIES optimized ${DCMTK_${lib}_LIBRARY_RELEASE}) + endif() + + if(DCMTK_${lib}_LIBRARY_DEBUG) + list(APPEND DCMTK_LIBRARIES debug ${DCMTK_${lib}_LIBRARY_DEBUG}) + endif() + +endforeach() + +set(CMAKE_THREAD_LIBS_INIT) +if(DCMTK_oflog_LIBRARY_RELEASE OR DCMTK_oflog_LIBRARY_DEBUG) + # Hack - Not having a DCMTKConfig.cmake file to read the settings from, we will attempt to + # find the library in all cases. + # Ideally, pthread library should be discovered only if DCMTK_WITH_THREADS is enabled. + set(CMAKE_THREAD_PREFER_PTHREAD TRUE) + find_package(Threads) +endif() + +if(CMAKE_THREAD_LIBS_INIT) + list(APPEND DCMTK_LIBRARIES ${CMAKE_THREAD_LIBS_INIT}) +endif() + +# +# SPECIFIC CASE FOR DCMTK BUILD DIR as DCMTK_DIR +# (as opposed to a DCMTK install dir) +# Have to find the source directory. +if(EXISTS ${DCMTK_DIR}/CMakeCache.txt) + load_cache(${DCMTK_DIR} READ_WITH_PREFIX "EXT" + DCMTK_SOURCE_DIR) + if(NOT EXISTS ${EXTDCMTK_SOURCE_DIR}) + message(FATAL_ERROR + "DCMTK build directory references +nonexistant DCMTK source directory ${EXTDCMTK_SOURCE_DIR}") + endif() +endif() + +set(DCMTK_config_TEST_HEADER osconfig.h) +set(DCMTK_dcmdata_TEST_HEADER dctypes.h) +set(DCMTK_dcmimage_TEST_HEADER dicoimg.h) +set(DCMTK_dcmimgle_TEST_HEADER dcmimage.h) +set(DCMTK_dcmjpeg_TEST_HEADER djdecode.h) +set(DCMTK_dcmnet_TEST_HEADER assoc.h) +set(DCMTK_dcmpstat_TEST_HEADER dcmpstat.h) +set(DCMTK_dcmqrdb_TEST_HEADER dcmqrdba.h) +set(DCMTK_dcmsign_TEST_HEADER sicert.h) +set(DCMTK_dcmsr_TEST_HEADER dsrtree.h) +set(DCMTK_dcmtls_TEST_HEADER tlslayer.h) +set(DCMTK_ofstd_TEST_HEADER ofstdinc.h) +set(DCMTK_oflog_TEST_HEADER oflog.h) +set(DCMTK_dcmjpls_TEST_HEADER djlsutil.h) + +set(DCMTK_INCLUDE_DIR_NAMES) + +foreach(dir + config + dcmdata + dcmimage + dcmimgle + dcmjpeg + dcmjpls + dcmnet + dcmpstat + dcmqrdb + dcmsign + dcmsr + dcmtls + ofstd + oflog) + if(EXTDCMTK_SOURCE_DIR) + set(SOURCE_DIR_PATH + ${EXTDCMTK_SOURCE_DIR}/${dir}/include/dcmtk/${dir}) + endif() + find_path(DCMTK_${dir}_INCLUDE_DIR + ${DCMTK_${dir}_TEST_HEADER} + PATHS + ${DCMTK_DIR}/${dir}/include + ${DCMTK_DIR}/${dir} + ${DCMTK_DIR}/include/dcmtk/${dir} + ${DCMTK_DIR}/${dir}/include/dcmtk/${dir} + ${DCMTK_DIR}/include/${dir} + ${SOURCE_DIR_PATH} + ) + mark_as_advanced(DCMTK_${dir}_INCLUDE_DIR) + list(APPEND DCMTK_INCLUDE_DIR_NAMES DCMTK_${dir}_INCLUDE_DIR) + + if(DCMTK_${dir}_INCLUDE_DIR) + # add the 'include' path so eg + #include "dcmtk/dcmimgle/dcmimage.h" + # works + get_filename_component(_include ${DCMTK_${dir}_INCLUDE_DIR} PATH) + get_filename_component(_include ${_include} PATH) + list(APPEND + DCMTK_INCLUDE_DIRS + ${DCMTK_${dir}_INCLUDE_DIR} + ${_include}) + endif() +endforeach() + +list(APPEND DCMTK_INCLUDE_DIRS ${DCMTK_DIR}/include) + +if(WIN32) + list(APPEND DCMTK_LIBRARIES netapi32 wsock32) +endif() + +if(DCMTK_ofstd_INCLUDE_DIR) + get_filename_component(DCMTK_dcmtk_INCLUDE_DIR + ${DCMTK_ofstd_INCLUDE_DIR} + PATH + CACHE) + list(APPEND DCMTK_INCLUDE_DIRS ${DCMTK_dcmtk_INCLUDE_DIR}) + mark_as_advanced(DCMTK_dcmtk_INCLUDE_DIR) +endif() + +# Compatibility: This variable is deprecated +set(DCMTK_INCLUDE_DIR ${DCMTK_INCLUDE_DIRS}) + +find_package_handle_standard_args(DCMTK + REQUIRED_VARS ${DCMTK_INCLUDE_DIR_NAMES} DCMTK_LIBRARIES + FAIL_MESSAGE "Please set DCMTK_DIR and re-run configure") + +# Workaround bug in packaging of DCMTK 3.6.0 on Debian. +# See http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=637687 +# +# By setting 'DCMTK_FIND_PACKAGE_SKIP_ADD_DEFINITIONS' to '1' before +# calling 'find_package(DCMTK)', the variable 'DCMTK_DEFINITIONS' will be set +# appropriately. +if(DCMTK_FOUND AND UNIX AND NOT APPLE) + include(CheckCXXSourceCompiles) + set(CMAKE_REQUIRED_FLAGS ) + set(CMAKE_REQUIRED_DEFINITIONS ) + set(CMAKE_REQUIRED_INCLUDES ${DCMTK_INCLUDE_DIRS}) + set(CMAKE_REQUIRED_LIBRARIES ${DCMTK_LIBRARIES}) + check_cxx_source_compiles("#include <dcmtk/config/osconfig.h>\n#include <dcmtk/ofstd/ofstream.h>\nint main(int,char*[]){return 0;}" + DCMTK_HAVE_CONFIG_H_OPTIONAL + ) + if(NOT DCMTK_HAVE_CONFIG_H_OPTIONAL) + set(DCMTK_DEFINITIONS "HAVE_CONFIG_H") + endif() +endif() + +message(STATUS "Trying to find DCMTK relying on FindDCMTK.cmake - ok") diff -ruN InsightToolkit-4.13.2.orig/Modules/ThirdParty/DCMTK/CMakeLists.txt InsightToolkit-4.13.2/Modules/ThirdParty/DCMTK/CMakeLists.txt --- InsightToolkit-4.13.2.orig/Modules/ThirdParty/DCMTK/CMakeLists.txt 2016-05-26 18:32:22.000000000 +0300 +++ InsightToolkit-4.13.2/Modules/ThirdParty/DCMTK/CMakeLists.txt 2016-10-02 12:37:14.117972925 +0300 @@ -154,14 +154,14 @@ # When this module is loaded by an app, load DCMTK too. set(ITKDCMTK_EXPORT_CODE_INSTALL " set(DCMTK_DIR \"${DCMTK_DIR}\") -find_package(DCMTK REQUIRED NO_MODULE) +find_package(DCMTK REQUIRED) ") set(ITKDCMTK_EXPORT_CODE_BUILD " if(NOT ITK_BINARY_DIR) set(CMAKE_MODULE_PATH \"${CMAKE_CURRENT_SOURCE_DIR}/CMake\" \${CMAKE_MODULE_PATH}) set(DCMTK_DIR \"${DCMTK_DIR}\") - find_package(DCMTK REQUIRED NO_MODULE) + find_package(DCMTK REQUIRED) endif() ") diff -ruN InsightToolkit-4.13.2.orig/Modules/ThirdParty/DCMTK/itk-module-init.cmake InsightToolkit-4.13.2/Modules/ThirdParty/DCMTK/itk-module-init.cmake --- InsightToolkit-4.13.2.orig/Modules/ThirdParty/DCMTK/itk-module-init.cmake 2016-05-26 18:32:22.000000000 +0300 +++ InsightToolkit-4.13.2/Modules/ThirdParty/DCMTK/itk-module-init.cmake 2016-10-02 12:37:41.557974143 +0300 @@ -12,7 +12,7 @@ if(ITK_USE_SYSTEM_DCMTK) # Use local FindDCMTK.cmake. list(INSERT CMAKE_MODULE_PATH 0 "${CMAKE_CURRENT_LIST_DIR}/CMake") - find_package(DCMTK REQUIRED NO_MODULE) + find_package(DCMTK REQUIRED) else(ITK_USE_SYSTEM_DCMTK) # Copied and mofified from DCMTK/CMake/3rdparty.cmake if(NOT DEFINED DCMTK_USE_ICU)
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