File parallel-netcdf.spec of Package parallel-netcdf
#
# spec file for package parallel-netcdf
#
# Copyright (c) 2015 SUSE LINUX Products GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
%if 0%{?sles_version}
%define _mvapich2 1
%endif
%if 0%{?suse_version}
%define _openmpi 1
%endif
%define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2}
Name: parallel-netcdf
%define libname libpnetcdf
Version: 1.6.1
Release: 0
%define sonum 1
Summary: High-performance parallel I/O with the NetCDF scientific data format
License: NetCDF
Group: Productivity/Scientific/Other
Url: http://cucis.ece.northwestern.edu/projects/PnetCDF/index.html
Source0: http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/%{name}-%{version}.tar.bz2
# PATCH-FIX-OPENSUSE parallel-netcdf-1.6.1-destdir.patch Fix install directories
Patch0: parallel-netcdf-1.6.1-destdir.patch
BuildRequires: bison
BuildRequires: flex
BuildRequires: gcc-c++
BuildRequires: gcc-fortran
%if 0%{?_openmpi}
BuildRequires: openmpi-devel
%endif
%if 0%{?_mvapich2}
BuildRequires: mvapich2-devel
%endif
BuildRoot: %{_tmppath}/%{name}-%{version}-build
%description
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a freely-distributed collection of software libraries
for C, Fortran, C++, and perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The NetCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
Parallel netCDF (PnetCDF) is a library providing high-performance I/O while
still maintaining file-format compatibility with Unidata's NetCDF.
%package openmpi
Summary: High-performance parallel I/O with the NetCDF scientific data format
Group: Productivity/Scientific/Other
Requires: %{libname}%{sonum}-openmpi = %{version}
%description openmpi
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a freely-distributed collection of software libraries
for C, Fortran, C++, and perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The NetCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
Parallel netCDF (PnetCDF) is a library providing high-performance I/O while
still maintaining file-format compatibility with Unidata's NetCDF.
This package contains the openmpi version of utility functions for
working with NetCDF files.
%package mvapich2
Summary: High-performance parallel I/O with the NetCDF scientific data format
Group: Productivity/Scientific/Other
Requires: %{libname}%{sonum}-mvapich2 = %{version}
%description mvapich2
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a freely-distributed collection of software libraries
for C, Fortran, C++, and perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The NetCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
Parallel netCDF (PnetCDF) is a library providing high-performance I/O while
still maintaining file-format compatibility with Unidata's NetCDF.
This package contains the mvapich2 version of utility functions for
working with NetCDF files.
%package -n %{libname}%{sonum}-openmpi
Summary: High-performance parallel I/O with the NetCDF scientific data format
Group: Productivity/Scientific/Other
Provides: %{libname}-openmpi = %{version}
%description -n %{libname}%{sonum}-openmpi
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a freely-distributed collection of software libraries
for C, Fortran, C++, and perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The NetCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
Parallel netCDF (PnetCDF) is a library providing high-performance I/O while
still maintaining file-format compatibility with Unidata's NetCDF.
This package contains the openmpi version of the PnetCDF runtime
libraries.
%package -n %{libname}%{sonum}-mvapich2
Summary: High-performance parallel I/O with the NetCDF scientific data format
Group: Productivity/Scientific/Other
Provides: %{libname}-mvapich2 = %{version}
%description -n %{libname}%{sonum}-mvapich2
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a freely-distributed collection of software libraries
for C, Fortran, C++, and perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The NetCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
Parallel netCDF (PnetCDF) is a library providing high-performance I/O while
still maintaining file-format compatibility with Unidata's NetCDF.
This package contains the mvapich2 version of the PnetCDF runtime
libraries.
%package devel-data
Summary: Development data files for %{name}
Group: Development/Libraries/Parallel
%description devel-data
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a freely-distributed collection of software libraries
for C, Fortran, C++, and perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The NetCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
Parallel netCDF (PnetCDF) is a library providing high-performance I/O while
still maintaining file-format compatibility with Unidata's NetCDF.
This package contains generic files needed to create projects that use
any version of PnetCDF.
%package openmpi-devel
Summary: Development files for %{name}-openmpi
Group: Development/Libraries/Parallel
Requires: openmpi-devel
Requires: %{libname}%{sonum}-openmpi = %{version}
%description openmpi-devel
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a freely-distributed collection of software libraries
for C, Fortran, C++, and perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The NetCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
Parallel netCDF (PnetCDF) is a library providing high-performance I/O while
still maintaining file-format compatibility with Unidata's NetCDF.
This package contains all files needed to create projects that use
the openmpi version of PnetCDF.
%package mvapich2-devel
Summary: Development files for %{name}-mvapich2
Group: Development/Libraries/Parallel
Requires: mvapich2-devel
Requires: %{libname}%{sonum}-mvapich2 = %{version}
%description mvapich2-devel
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a freely-distributed collection of software libraries
for C, Fortran, C++, and perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The NetCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
Parallel netCDF (PnetCDF) is a library providing high-performance I/O while
still maintaining file-format compatibility with Unidata's NetCDF.
This package contains all files needed to create projects that use
the mvapich2 version of PnetCDF.
%package openmpi-devel-static
Summary: Static development files for %{name}-openmpi
Group: Development/Libraries/Parallel
Requires: %{name}-openmpi-devel = %{version}
%description openmpi-devel-static
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a freely-distributed collection of software libraries
for C, Fortran, C++, and perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The NetCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
Parallel netCDF (PnetCDF) is a library providing high-performance I/O while
still maintaining file-format compatibility with Unidata's NetCDF.
This package contains the openmpi versions of the static libraries
for PnetCDF.
%package mvapich2-devel-static
Summary: Static development files for %{name}-mvapich2
Group: Development/Libraries/Parallel
Requires: %{name}-mvapich2-devel = %{version}
%description mvapich2-devel-static
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a freely-distributed collection of software libraries
for C, Fortran, C++, and perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The NetCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
Parallel netCDF (PnetCDF) is a library providing high-performance I/O while
still maintaining file-format compatibility with Unidata's NetCDF.
This package contains the mvapich2 versions of the static libraries
for PnetCDF.
%prep
%setup -q -n %{name}-%{version}
%patch0 -p1
set -- *
for mpi in %_mpi; do
mkdir $mpi
mkdir $mpi/shared
cp -ap "$@" $mpi
done
%build
for mpi in %_mpi; do
pushd $mpi
%configure --prefix=%{_libdir}/mpi/gcc/$mpi \
--libdir=%{_libdir}/mpi/gcc/$mpi/%{_lib} \
--with-mpi=%{_libdir}/mpi/gcc/$mpi
make
pushd shared
%{_libdir}/mpi/gcc/$mpi/bin/mpif77 -shared -Wl,-soname=libpnetcdf.so.%{sonum} -o ../libpnetcdf.so.%{version}
popd
popd
done
%install
for mpi in %_mpi; do
pushd $mpi
%make_install
%if %{_lib} != lib
mv %{buildroot}%{_libdir}/mpi/gcc/$mpi/lib %{buildroot}%{_libdir}/mpi/gcc/$mpi/%{_lib}
%endif
install -m 755 libpnetcdf.so.%{version} %{buildroot}%{_libdir}/mpi/gcc/$mpi/%{_lib}
pushd %{buildroot}%{_libdir}/mpi/gcc/$mpi/%_lib
ln -s libpnetcdf.so.%{version} libpnetcdf.so.%{sonum}
ln -s libpnetcdf.so.%{version} libpnetcdf.so
popd
find %{buildroot} -name '*.la' -exec rm {} \;
popd
done
# rpm macro for version checking
mkdir -p %{buildroot}%{_sysconfdir}/rpm
cat > %{buildroot}%{_sysconfdir}/rpm/macros.pnetcdf <<EOF
#
# RPM macros for hdf5 packaging
#
%_pnetcdf_sonum %{sonum}
%_pnetcdf_version %{version}
EOF
%if 0%{?_openmpi}
%post -n libpnetcdf1-openmpi -p /sbin/ldconfig
%postun -n libpnetcdf1-openmpi -p /sbin/ldconfig
%endif
%if 0%{?_mvapich2}
%post -n libpnetcdf1-mvapich2 -p /sbin/ldconfig
%postun -n libpnetcdf1-mvapich2 -p /sbin/ldconfig
%endif
%files devel-data
%defattr(-,root,root)
%{_sysconfdir}/rpm/macros.pnetcdf
%if 0%{?_openmpi}
%files openmpi
%defattr(-,root,root)
%{_libdir}/mpi/gcc/openmpi/bin/*
%dir %{_libdir}/mpi/gcc/openmpi/man/
%{_libdir}/mpi/gcc/openmpi/man/*
%files -n %{libname}%{sonum}-openmpi
%defattr(-,root,root)
%doc COPYRIGHT CREDITS RELEASE_NOTES
%doc README README.LINUX README.large_files
%{_libdir}/mpi/gcc/openmpi/%{_lib}/*.so.*
%files openmpi-devel
%defattr(-,root,root)
%{_libdir}/mpi/gcc/openmpi/include/*
%{_libdir}/mpi/gcc/openmpi/%{_lib}/*.so
%files openmpi-devel-static
%defattr(-,root,root)
%{_libdir}/mpi/gcc/openmpi/%{_lib}/*.a
%endif
%if 0%{?_mvapich2}
%files mvapich2
%defattr(-,root,root)
%{_libdir}/mpi/gcc/mvapich2/bin/*
%dir %{_libdir}/mpi/gcc/mvapich2/man/
%{_libdir}/mpi/gcc/mvapich2/man/*
%files -n %{libname}%{sonum}-mvapich2
%defattr(-,root,root,-)
%doc COPYRIGHT CREDITS RELEASE_NOTES
%doc README README.LINUX README.large_files
%{_libdir}/mpi/gcc/mvapich2/%{_lib}/*.so.*
%files mvapich2-devel
%defattr(-,root,root,-)
%{_libdir}/mpi/gcc/mvapich2/include/*
%{_libdir}/mpi/gcc/mvapich2/%{_lib}/*.so
%files mvapich2-devel-static
%defattr(-,root,root,-)
%{_libdir}/mpi/gcc/mvapich2/%{_lib}/*.a
%endif
%changelog
