Revisions of R-base

Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 489054 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 52)
- And again that ldconfig call. Newline was obviously wrong.
  Hopefully correct now. 

- Jan Engelhardt <jengelh@inai.de> asked for reverting the change
  to the ldconfig call. So be it.

- improvements for
  a) calling /sbin/ldconfig, which no longer gives a warning
  b) unregistering info-pages in %preun instead of %postun
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 477409 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 51)
- a change in OBS now requires a BuildRequire: shadow for
  some openSUSE releases.

- upstream release 3.3.3
- Most important changes
  CHANGES IN R 3.3.3:
  NEW FEATURES:
    * Changes when redirection of a http:// URL to a https:// URL is
      encountered:
        * The internal methods of download.file() and url() now report
          that they cannot follow this (rather than failing silently).
        * (Unix-alike) download.file(method = "auto") (the default)
          re-tries with method = "libcurl".
        * (Unix-alike) url(method = "default") with an explicit open
          argument re-tries with method = "libcurl".  This covers many
          of the usages, e.g. readLines() with a URL argument.
  INSTALLATION on a UNIX-ALIKE:
    * The configure check for the zlib version is now robust to
      versions longer than 5 characters, including 1.2.11.
  UTILITIES:
    * Environmental variable _R_CHECK_TESTS_NLINES_ controls how R CMD
      check reports failing tests (see SS8 of the 'R Internals' manual).
  DEPRECATED AND DEFUNCT:
    * (C-level Native routine registration.)  The undocumented styles
      field of the components of R_CMethodDef and R_FortranMethodDef is
      deprecated.
  BUG FIXES:
    * vapply(x, *) now works with long vectors x.  (PR#17174)
    * isS3method("is.na.data.frame") and similar are correct now.
      (PR#17171)
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 438022 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 50)
- upstream release 3.3.2
- Most important changes
  CHANGES IN R 3.3.2:
  NEW FEATURES:
    * extSoftVersion() now reports the version (if any) of the readline
      library in use.
    * The version of LAPACK included in the sources has been updated to
      3.6.1, a bug-fix release including a speedup for the
      non-symmetric case of eigen().
    * Use options(deparse.max.lines=) to limit the number of lines
      recorded in .Traceback and other deparsing activities.
    * format(<AsIs>) looks more regular, also for non-character atomic
      matrices.
    * abbreviate() gains an option named = TRUE.
    * The online documentation for package methods is extensively
      rewritten.  The goals are to simplify documentation for basic
      use, to note old features not recommended and to correct
      out-of-date information.
    * Calls to setMethod() no longer print a message when creating a
      generic function in those cases where that is natural: S3
      generics and primitives.
  INSTALLATION and INCLUDED SOFTWARE:
    * Versions of the readline library >= 6.3 had been changed so that
      terminal window resizes were not signalled to readline: code has
      been added using a explicit signal handler to work around that
      (when R is compiled against readline >= 6.3).  (PR#16604)
    * configure works better with Oracle Developer Studio 12.5.
  UTILITIES:
    * R CMD check reports more dubious flags in files
      src/Makevars[.in], including -w and -g.
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 406738 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 49)
Fix typo in Group tag. (forwarded request 405931 from TheBlackCat)
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 403835 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 48)
- upstream release 3.3.1
- Most important changes
  CHANGES IN R 3.3.1:
  BUG FIXES:
    * R CMD INSTALL and hence install.packages() gave an internal error
      installing a package called description from a tarball on a
      case-insensitive file system.
    * match(x, t) (and hence x %in% t) failed when x was of length one,
      and either character and x and t only differed in their Encoding
      or when x and t where complex with NAs or NaNs.  (PR#16885.)
    * unloadNamespace(ns) also works again when ns is a 'namespace', as
      from getNamespace().
    * rgamma(1,Inf) or rgamma(1, 0,0) no longer give NaN but the
      correct limit.
    * length(baseenv()) is correct now.
    * pretty(d, ..) for date-time d rarely failed when "halfmonth" time
      steps were tried (PR#16923) and on 'inaccurate' platforms such as
      32-bit windows or a configuration with --disable-long-double; see
      comment #15 of PR#16761.
    * In text.default(x, y, labels), the rarely(?) used default for
      labels is now correct also for the case of a 2-column matrix x
      and missing y.
    * as.factor(c(a = 1L)) preserves names() again as in R < 3.1.0.
    * strtrim(""[0], 0[0]) now works.
    * Use of Ctrl-C to terminate a reverse incremental search started
      by Ctrl-R in the readline-based Unix terminal interface is now
      supported for readline >= 6.3 (Ctrl-G always worked).  (PR#16603)
    * diff(<difftime>) now keeps the "units" attribute, as subtraction
      already did, PR#16940.
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 396576 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 47)
- further cleanup of spec file.
  Removed unneeded explicit Requires for
  libcairo2/libfreetype6/liblzma5/libreadline6
  Removed removal of backup file that was meanwhile removed upstream.

  Thx to Jan Engelhardt, again!

- clean up of spec file after comments from  Jan Engelhardt in 
  https://build.opensuse.org/request/show/393426
  Some unneeded explicit BuildRequires removed. 

- tre.patch was removed.  

- and libbz2-devel needed, too.
  

- added BuildRequires: bzip2
  for i586.

- upstream release 3.3.0
  CHANGES IN R 3.3.0:
  SIGNIFICANT USER-VISIBLE CHANGES:
    * nchar(x, *)'s argument keepNA governing how the result for NAs in
      x is determined, gets a new default keepNA = NA which returns NA
      where x is NA, except for type = "width" which still returns 2,
      the formatting / printing width of NA.
    * All builds have support for https: URLs in the default methods
      for download.file(), url() and code making use of them.
      Unfortunately that cannot guarantee that any particular https:
      URL can be accessed.  For example, server and client have to
      successfully negotiate a cryptographic protocol (TLS/SSL, ...)
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 390176 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 46)
- CHANGES IN R 3.2.5:
  BUG FIXES:
    • format.POSIXlt() behaved incorrectly in R 3.2.4.  E.g. the output
      of format(as.POSIXlt(paste0(1940:2000,"-01-01"), tz = "CET"),
      usetz = TRUE) ended in two "CEST" time formats.
    • A typo in the Makefile for src/extra/xz prevented builds of
      liblzma.a. (Notice that this will become unbundled in 3.3.0.)
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 374178 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 45)
- upstrem releases minorst bug fix release
  NEWS: The 3.2.4 release had two annoyances which we would rather 
  not have in an "ultra-stable" release, designed to hang around 
  for the duration of the 3.3 series. One was a relatively minor 
  Makefile issue affecting system using R's bundled lzma library. 
  The other, rather more serious, affected printing and formatting 
  of POSIXlt objects, which would unpredictably get the Daylight 
  Savings Time wrong. 

- Some version numbers of recommended packages corrected 

- Release numbers for sub-packages improved

- added MakefileTypo.patch to enable building for 12.2
  was a one charcter show stopper 

- upstream release 3.2.4, only minor improvements
CHANGES IN R 3.2.4:
  NEW FEATURES:
    • install.packages() and related functions now give a more
      informative warning when an attempt is made to install a base
      package.
    • summary(x) now prints with less rounding when x contains infinite
      values. (Request of PR#16620.)
    • provideDimnames() gets an optional unique argument.
    • shQuote() gains type = "cmd2" for quoting in cmd.exe in Windows.
      (Response to PR#16636.)
    • The data.frame method of rbind() gains an optional argument
      stringsAsFactors (instead of only depending on
      getOption("stringsAsFactors")).
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 348435 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 44)
- Upstream release R-3.2.3
  CHANGES IN R 3.2.3:
  NEW FEATURES:
    * Some recently-added Windows time zone names have been added to
      the conversion table used to convert these to Olson names.
      (Including those relating to changes for Russia in Oct 2014, as
      in PR#16503.)
    * (Windows) Compatibility information has been added to the
      manifests for Rgui.exe, Rterm.exe and Rscript.exe.  This should
      allow win.version() and Sys.info() to report the actual Windows
      version up to Windows 10.
    * Windows "wininet" FTP first tries EPSV / PASV mode rather than
      only using active mode (reported by Dan Tenenbaum).
    * which.min(x) and which.max(x) may be much faster for logical and
      integer x and now also work for long vectors.
    * The 'emulation' part of tools::texi2dvi() has been somewhat
      enhanced, including supporting quiet = TRUE.  It can be selected
      by texi2dvi = "emulation".
      (Windows) MiKTeX removed its texi2dvi.exe command in Sept 2015:
      tools::texi2dvi() tries texify.exe if it is not found.
    * (Windows only) Shortcuts for printing and saving have been added
      to menus in Rgui.exe.  (Request of PR#16572.)
    * loess(..., iterTrace=TRUE) now provides diagnostics for
      robustness iterations, and the print() method for
      summary(<loess>) shows slightly more.
    * The included version of PCRE has been updated to 8.38, a bug-fix
      release.
    * View() now displays nested data frames in a more friendly way.
      (Request with patch in PR#15915.)
  INSTALLATION and INCLUDED SOFTWARE:
Stephan Kulow's avatar Stephan Kulow (coolo) accepted request 325503 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 43)
Disable building man files for oS:42 (forwarded request 324418 from badshah400)
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 323906 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 42)
- Upstream release 3.2.2
- Most important
CHANGES IN R 3.2.2:
  SIGNIFICANT USER-VISIBLE CHANGES:
    * It is now easier to use secure downloads from https:// URLs on
      builds which support them: no longer do non-default options need
      to be selected to do so.  In particular, packages can be
      installed from repositories which offer https:// URLs, and those
      listed by setRepositories() now do so (for some of their
      mirrors).
      Support for https:// URLs is available on Windows, and on other
      platforms if support for libcurl was compiled in and if that
      supports the https protocol (system installations can be expected
      to do).  So https:// support can be expected except on rather old
      OSes (an example being OS X 'Snow Leopard', where a non-system
      version of libcurl can be used).
      (Windows only) The default method for accessing URLs _via_
      download.file() and url() has been changed to be "wininet" using
      Windows API calls.  This changes the way proxies need to be set
      and security settings made: there have been some reports of sites
      being inaccessible under the new default method (but the previous
      methods remain available).
  NEW FEATURES:
    * cmdscale() gets new option list. for increased flexibility when a
      list should be returned.
    * configure now supports texinfo version 6.0, which (unlike the
      change from 4.x to 5.0) is a minor update.  (Wish of PR#16456.)
    * (Non-Windows only) download.file() with default method = "auto"
      now chooses "libcurl" if that is available and a https:// or
      ftps:// URL is used.
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 312518 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 41)
- Upstream release 3.2.1
- Improvement of build: include libcurl and texlive-dvips/
  texlive-hevetic
- Most important
  CHANGES IN R 3.2.1:
  NEW FEATURES:
    * utf8ToInt() now checks that its input is valid UTF-8 and returns
      NA if it is not.
    * install.packages() now allows type = "both" with repos = NULL if
      it can infer the type of file.
    * nchar(x, *) and nzchar(x) gain a new argument keepNA which
      governs how the result for NAs in x is determined.  For the R
      3.2.x series, the default remains FALSE which is fully back
      compatible.  From R 3.3.0, the default will change to keepNA = NA
      and you are advised to consider this for code portability.
    * news() more flexibly extracts dates from package NEWS.Rd files.
    * lengths(x) now also works (trivially) for atomic x and hence can
      be used more generally as an efficient replacement of sapply(x,
      length) and similar.
    * The included version of PCRE has been updated to 8.37, a bug-fix
      release.
    * diag() no longer duplicates a matrix when extracting its
      diagonal.
    * as.character.srcref() gains an argument to allow characters
      corresponding to a range of source references to be extracted.
  BUG FIXES:
    * acf() and ccf() now guarantee values strictly in [-1,1] (instead
      of sometimes very slightly outside). PR#15832.
    * as.integer("111111111111") now gives NA (with a warning) as it
      does for the corresponding numeric or negative number coercions.
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 297947 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 40)
- Upstream release 3.2.0
  For all releases <= 13.2 Publishing:texinfo had to be linked, because
  texinfo >= 5.1 is needed starting from 3.2.0.
  Factory works without any additional dependencies.
- Most important
  CHANGES IN 3.2.0:
  NEW FEATURES:
    * anyNA() gains a recursive argument.
    * When x is missing and names is not false (including the default
      value), Sys.getenv(x, names) returns an object of class "Dlist"
      and hence prints tidily.
    * (Windows.)  shell() no longer consults the environment variable
      SHELL: too many systems have been encountered where it was set
      incorrectly (usually to a path where software was compiled, not
      where it was installed).  R_SHELL, the preferred way to select a
      non-default shell, can be used instead.
    * Some unusual arguments to embedFonts() can now be specified as
      character vectors, and the defaults have been changed
      accordingly.
    * Functions in the Summary group duplicate less.  (PR#15798)
    * (Unix-alikes.) system(cmd, input = ) now uses
      'shell-execution-environment' redirection, which will be more
      natural if cmd is not a single command (but requires a
      POSIX-compliant shell). (Wish of PR#15508)
    * read.fwf() and read.DIF() gain a fileEncoding argument, for
      convenience.
    * Graphics devices can add attributes to their description in
      .Device and .Devices.  Several of those included with R use a
      "filepath" attribute.
    * pmatch() uses hashing in more cases and so is faster at the
      expense of using more memory. (PR#15697)
    * pairs() gains new arguments to select sets of variables to be
      plotted against each other.
Dominique Leuenberger's avatar Dominique Leuenberger (dimstar_suse) accepted request 290019 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 39)
- Upstream release 3.1.3
- Most important
  CHANGES IN R 3.1.3:
  NEW FEATURES:
    * The internal method of download.file() can now handle files
      larger than 2GB on 32-bit builds which support such files (tested
      on 32-bit R running on 64-bit Windows).
    * kruskal.test() warns on more types of suspicious input.
    * The as.dendrogram() method for "hclust" objects gains a check
      argument protecting against memory explosion for invalid inputs.
    * capabilities() has a new item long.double which indicates if the
      build uses a long double type which is longer than double.
    * nlm() no longer modifies the callback argument in place (a new
      vector is allocated for each invocation, which mimics the
      implicit duplication that occurred in R < 3.1.0); note that this
      is a change from the previously documented behavior. (PR#15958)
    * icuSetCollate() now accepts locale = "ASCII" which uses the basic
      C function strcmp and so collates strings byte-by-byte in
      numerical order.
    * sessionInfo() tries to report the OS version in use (not just
      that compiled under, and including details of Linux
      distributions).
    * model.frame() (used by lm() and many other modelling functions)
      now warns when it drops contrasts from factors.  (Wish of
      PR#16119)
    * install.packages() and friends now accept the value type =
      "binary" as a synonym for the native binary type on the platform
      (if it has one).
    * Single source or binary files can be supplied for
      install.packages(type = "both") and the appropriate type and
Stephan Kulow's avatar Stephan Kulow (coolo) accepted request 259150 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 37)
- Upstream release 3.1.2
- Most important
  CHANGES IN R 3.1.2:
  NEW FEATURES:
    * embedFonts() now defaults to format = "ps2write" for .ps and .eps
      files.  This is available in Ghostscript 9.x (since 2010) whereas
      the previous default, format = "pswrite", was removed in
      Ghostscript 9.10.
    * For consistency with [dpqr]norm(), [dp]lnorm(sdlog = 0) model a
      point mass at exp(mulog) rather than return NaN (for an error).
    * capabilities() now reports if ICU is compiled in for use for
      collation (it is only actually used if a suitable locale is set
      for collation, and never for a C locale).
    * (OS X only.) Package tcltk checks when loaded if it is linked
      against the CRAN X11-based Tcl/Tk and if so that the Tcl/Tk
      component and the X11 libraries are installed.  This allows more
      informative error messages to be given advising the installation
      of the missing component or of XQuartz.
      The X11() device and X11-based versions of the data editor and
      viewer (invoked by edit() and View() for data frames and matrices
      from command-line R) check that the X11 libraries are installed
      and if not advises installing XQuartz.
    * icuSetCollate() allows locale = "default", and locale = "none" to
      use OS services rather than ICU for collation.
      Environment variable R_ICU_LOCALE can be used to set the default
      ICU locale, in case the one derived from the OS locale is
      inappropriate (this is currently necessary on Windows).
    * New function icuGetCollate() to report on the ICU collation
      locale in use (if any).
    * utils::URLencode() was updated to use unreserved and reserved
Adrian Schröter's avatar Adrian Schröter (adrianSuSE) committed (revision 36)
Split 13.2 from Factory
Stephan Kulow's avatar Stephan Kulow (coolo) accepted request 240206 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 35)
Upstream release 3.1.1
Added Provides: R-parallel
Stephan Kulow's avatar Stephan Kulow (coolo) accepted request 238947 from Factory Maintainer's avatar Factory Maintainer (factory-maintainer) (revision 34)
Automatic submission by obs-autosubmit
Stephan Kulow's avatar Stephan Kulow (coolo) accepted request 233583 from Detlef Steuer's avatar Detlef Steuer (dsteuer) (revision 33)
- first submit from new devel project
- Removed / commented out symlink to %{_bindir}/r
  new package 'littler' should be used instead for packages
  that need /usr/bin/r 

-  Add make dependency for Rcmd

- Created symlink to %{_bindir}/r
  Many CRAN packages ship with scripts which call %{_bindir}/r,
  which creates a dependency on it, this fixes that.
Displaying revisions 41 - 60 of 92
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