Perl Modules for Biology
http://search.cpan.org/dist/BioPerl/
BioPerl is the product of a community effort to produce Perl code which is
useful in biology. Examples include Sequence objects, Alignment objects and
database searching objects. These objects not only do what they are
advertised to do in the documentation, but they also interact - Alignment
objects are made from the Sequence objects, Sequence objects have access to
Annotation and SeqFeature objects and databases, Blast objects can be
converted to Alignment objects, and so on. This means that the objects
provide a coordinated and extensible framework to do computational biology.
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Source Files
| Filename | Size | Changed |
|---|---|---|
| BioPerl-1.7.6.tar.gz | 0007514084 7.17 MB | |
| cpanspec.yml | 0000000669 669 Bytes | |
| perl-BioPerl.changes | 0000005802 5.67 KB | |
| perl-BioPerl.spec | 0000005153 5.03 KB |
Revision 8 (latest revision is 10)
Tina Müller (tinita)
accepted
request 731701
from
Tina Müller (tinita)
(revision 8)
- Add build dependency Gd
- Remove deps.patch (not used anymore)
- updated to 1.7.6
see /usr/share/doc/packages/perl-BioPerl/Changes
1.7.6 2019-08-28 12:37:01+01:00 Europe/London
* The program bp_classify_hits_kingdom has been removed and is
now part of the examples documentation instead.
* GD is now listed as a suggestion instead of a requirement. The
bp_chaos_plot program will now work with the GD module.
* New method Bio::Tree::Statistics::transfer_bootstrap_expectation
to compute Transfer Bootstrap Expectation (TBE) for internal
nodes based on the methods outlined in Lemoine et al, Nature,
2018.
* New method Bio::SeqIO::fasta::next_seq_fast to retrieve next
sequence in the stream faster but not perfect.
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