Perl Modules for Biology
http://search.cpan.org/dist/BioPerl/
BioPerl is the product of a community effort to produce Perl code which is
useful in biology. Examples include Sequence objects, Alignment objects and
database searching objects. These objects not only do what they are
advertised to do in the documentation, but they also interact - Alignment
objects are made from the Sequence objects, Sequence objects have access to
Annotation and SeqFeature objects and databases, Blast objects can be
converted to Alignment objects, and so on. This means that the objects
provide a coordinated and extensible framework to do computational biology.
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Source Files
| Filename | Size | Changed |
|---|---|---|
| BioPerl-1.7.7.tar.gz | 0007532782 7.18 MB | |
| cpanspec.yml | 0000000669 669 Bytes | |
| perl-BioPerl.changes | 0000006686 6.53 KB | |
| perl-BioPerl.spec | 0000005231 5.11 KB |
Revision 9 (latest revision is 10)
Lars Vogdt (lrupp)
accepted
request 755080
from
Tina Müller (tinita)
(revision 9)
- updated to 1.7.7
see /usr/share/doc/packages/perl-BioPerl/Changes
1.7.7 2019-12-07 13:41:36-06:00 America/Chicago
* The program bp_chaos_plot has been removed.
* GD is now no longer a dependency, suggestion or requirement.
* #321 - GenBank format fix for un-quoted features, text wrapping
* Bio::DB::Query::WebQuery now includes methods for delay(), delay_policy(),
and a 'private' _sleep() function that mirror those from
Bio::DB::WebDBSeqI, primarily for compliance with potential website
restrictions for the number and frequency of queries (e.g. NCBI eUtils).
* Fix bug #329, related to Bio::Tree::Statistics::transfer_bootstrap_expectation
in last release.
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